Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq9234 340 4e-89 seq17740 176 9e-40 seq15326 132 1e-26 >seq9234 Length=2011 Score = 340 bits (376), Expect = 4e-89 Identities = 992/1513 (66%), Gaps = 37/1513 (2%) Strand=Plus/Minus Query 24957 AAGCCGGTAAAGACGGGCAGCGACTTCAAGGAAATCGACTTGCTCGGCCGTCAGGTCGAG 25016 ||| ||| ||||| ||| |||||| |||||| || ||| | || || || ||| | ||| Sbjct 1662 AAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACCTTCTGGGGCGGCAGCTGGAG 1603 Query 25017 CGGCTTGCACGCGTGCGCAAGTACGGCGAAACGGGGAAAGAGAGCGACTTAAACCCGAAC 25076 || || ||||| |||||| | || ||| || | ||||| || |||||| Sbjct 1602 CGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCGAAGGGGACTTGAATCCGAAC 1543 Query 25077 ATCGAGGCGCGCAACAAAGCGCCCCGTAAAGAAAAGGCCGCCCGCAACGATTTCAGCGAC 25136 |||| ||||||||| ||||| || ||| || |||||||| |||||| | Sbjct 1542 ATCGCGGCGCGCAATGCCGCGCCG---AAGCGCAAGCCCAAGCGCAACGAACTCAGCGCC 1486 Query 25137 GAGCAGATCGCACGGCTTCA--CGAGGCCTTTCTTGATTGCCAGTTCGGTTATCAAAAGG 25194 || |||||||| | ||| | | | || | | || | | ||| || || || Sbjct 1485 GACCAGATCGCGCTGCTGGAAACCAAGC--TGCGCGAGTCGAACTTCCCTTTCCATCAGA 1428 Query 25195 TGTGGTATCGAAACGGCCAT--CAGCGCACGCGCAACATTCTCAAGTCGCGGCAGATCGG 25252 |||| |||| | || | |||||| |||| ||| || || ||||||||||||| Sbjct 1427 ACTGGT-TCGAT-CAGCAGTACCAGCGCCTGCGCGCCATCCTGAAAGCGCGGCAGATCGG 1370 Query 25253 CGCGACGTTCTATTTCGCACGCGAGGCGCTAGACGATGCCTTGCAGACTGCACGCAATCA 25312 ||||| | || || | ||||||||||| | ||| | | | ||||| | Sbjct 1369 TGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCTCGGCCGCGAAAGAGGGGCGCAACAA 1310 Query 25313 GATTTTTCTATCGGCCAGCAAGGCGCAGGCGCACGTTTTCAAGTCGTACATTCGGCAGTT 25372 | |||| | ||||| ||||||||||| ||| ||| ||||| || | | Sbjct 1309 GCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTTCCGCAGCTACAT-CGTCGACT 1251 Query 25373 TGCCGCCGAGGCCGCCGAGGTCGAATTGACCGGCGACCCGATCATTTTGCCGAACATGGC 25432 | ||| | | | ||| ||||| ||| ||||| |||| || |||| || Sbjct 1250 T--CGCGAAAGAGGTCGACGTCGACCTGAAGGGCGAGAACATCAAGCTGTGGAACGGCGC 1193 Query 25433 AGAGTTGATTTTCCTCGGCACGAATTCGCGA--ACGGCGCAGAGCTATCACGGCAATTTC 25490 ||| |||| ||||| ||||| || ||| | ||||| ||||||||||||||| | ||| Sbjct 1192 CGAGCTGATCTTCCTTGGCACCAA--CGCCATGACGGCCCAGAGCTATCACGGCGACTTC 1135 Query 25491 TATTTCGACGAGTATTTTTGGGTGAGCGGGTTTCGCCAGCTCAACAAGGTTGCATCGGGC 25550 || ||||| || | ||||||||| | || | ||| |||||||| | || | Sbjct 1134 TACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGATCAACAAGCTGGCCAGTGCG 1075 Query 25551 ATGGCGATGCACAAGAAATGGCGAAAGACGTATTTTTCAACGCCGTCGAGCATCACGCAC 25610 ||||| ||||||| | ||||| ||||| ||||| || ||||| ||| || ||||| Sbjct 1074 ATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGACGCCCTCGGCGATGTCGCAC 1015 Query 25611 GAGGCTTACACCTTCTGGAGTGGCGAGCACTACAACAGGGGCCGCGCAAAGGCCGATCAC 25670 ||||| | | ||||||| ||||| || |||| ||||||||| || || ||| Sbjct 1014 GAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAACAAGGGCCGCGCGAAAAAGGACCAC 955 Query 25671 ATTCATCTCGATATTTCGCACTCGGCGCTCGCTCG-CGGCCGGCTCTGCGAGGATCGACA 25729 | | |||| | ||| | ||| || || |||| ||| || ||||| | Sbjct 954 GTCCGCATCGACACCAGCCACAAGATGCT-GCGCGGCGGCATGCTGGGCCTCGATCGCAA 896 Query 25730 GTTTCGCCAGATCGTGACGGTCGAGGATGCCGTCGCCGGCGGTTGCGACTTGTTCGATAT 25789 | ||| | ||||| ||||| || || |||||||| || | ||| |||||||||| Sbjct 895 ATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGCGATGGGCTTCGATCTGTTCGATAT 836 Query 25790 CGACGAGCTGCGCCTTGAATACAGCGCGCAGGAATACGCGAATCTGTTGATGTGTCAGTT 25849 || |||||||||| ||||||||| | || | |||||| ||||| ||||| ||||| Sbjct 835 CGCCGAGCTGCGCGAGGAATACAGCCTCGACGAGTTCGCGAACCTGTTCATGTGCCAGTT 776 Query 25850 TATCGACGATACCGCGTCGATCTTTCCGCTCGCCGAGCTGCAACGCTGCATGGTCGACTC 25909 |||||||| | | |||| | || |||| || || |||| |||||| ||||| Sbjct 775 CATCGACGACAGCTTGTCGCTGTTCACGCTGGCGCAGATGCAGGCTTGCATGATCGACAG 716 Query 25910 GTGGGAAGAATGGGCCGACGATTTCAAGCCGCTCGCGCCCCGCCCTTTCGGGTTCCGGCC 25969 ||||| ||| ||||| |||||||||| | || || | || | || Sbjct 715 CTGGGAGATGTGGAGCGACG---TCAAGCCGCTTTGGATTCGGCCCTACGCTCACTTTCC 659 Query 25970 GGTATGGGTTGGCTACGATCCAGCGCTTTCCGGCGACTCGGCCGGCCTTGTCNNNNNNNN 26029 ||| ||||| |||||||| ||| | ||||| | || | || || Sbjct 658 GGTGTGGGTCGGCTACGACCCATCAGACAAGGGCGATGCCGCTGCACTGGTGGTGGTCGC 599 Query 26030 NNNNNNNNNNNTGCCGGGGGGCAAGTTCCGCGTATTGCA-CAAGTGCCAATTTCGCGGCA 26088 |||| || |||||||||||| | | || | | | || || ||| Sbjct 598 GCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCCTACATCGCGAG-CAGTTCAAGGGCT 540 Query 26089 TGGATTTCGAGGGGCAAGCCGAGGCGATTCGACAGATCACTCAGCAATACAACGTCGAAT 26148 ||| ||||||| ||| |||||||| || || | |||||| |||||||||||||||| Sbjct 539 CGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGATCACCCAGCAATACAACGTCGTGC 480 Query 26149 ATATGTCGATCGATACGACGGGCATCGGCCAGGGTGTTTATCAGCTCGTCAAACAGTTCT 26208 |||| ||||| | ||| ||| | || || || | ||| ||||| | |||||| Sbjct 479 ATATCGGCATCGACAAGACCGGCCTGGGTGCTGGCGTGTTCCAGATCGTCGAGAAGTTCT 420 Query 26209 ATCCGAGCGCGGT--CGCGCT-CAACTATTCGCCCGAAATCAAGGGGCGTCTCGTGCTTA 26265 ||| | ||| | ||| | | || ||| | ||| ||| || ||||| | Sbjct 419 TTCC---CCAGGTGAAGGGCTACCAGTACAGCATCGAGGTGAAGCAGCGCCTGGTGCTGA 363 Query 26266 AGGGCTTGTCGGTGATCGGCAAGGGCCGGCTCGAATTCGATGCCGGTTGGACAGACCTAG 26325 ||| ||| ||| |||||| || || || |||||||| || ||||| ||| | | Sbjct 362 AGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGTTCGATGCTGGATGGACCGACATCG 303 Query 26326 CGCAATCCTTCATGGCCATTCGGAAAACCATG---ACGGCGAGCGGCCGAAAGGTGACAT 26382 | ||||||||||||| || | || || || ||||||||||| |||| | Sbjct 302 CCGCGGCCTTCATGGCCAT---CAAGCGCGTGCTCACCGCCAGCGGCCGAAACATGACCT 246 Query 26383 ACGAGGCGAGCCGCAGCGAGGAAACCGGCCACGCCGATCTAGCGTGGGCGTGCCTGCACG 26442 |||| || ||||| ||| | || || ||||| ||||| |||||||| |||||| Sbjct 245 ACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGGATCTTGCGTGGGCAACGATGCACG 186 Query 26443 CGCTCGATAACGA 26455 ||||||| ||||| Sbjct 185 CGCTCGACAACGA 173 >seq17740 Length=755 Score = 176 bits (194), Expect = 9e-40 Identities = 224/306 (73%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 27017 GACATTAATCAAGAGGTGTACGGCTTGCCCGAATATCTCGGCGCGCTGCACTCGGCATGG 27076 ||| | ||||||||| | ||||| |||||||| || || |||||||||| ||||| ||| Sbjct 422 GACGTCAATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGCAGTCGGCCTGG 481 Query 27077 TTGAACGAGTCGGCGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGCCGGT 27136 | |||||| | || || | || || || ||||| |||| || || ||||||||||| Sbjct 482 CTCAACGAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGTCGCACGCCGGC 541 Query 27137 TTCATCCTGTACATGACCGATGCGGCGCAAAGTCAAAGCGATGTCGAC-AAGATG----- 27190 |||||||| ||| || | || || | | ||| ||| | |||| |||| Sbjct 542 TTCATCCTCTACCTGTCGGACGC----CCAGGTC--AGCACGGCCGACGCGGATGCACTA 595 Query 27191 CGCGAGGCGTTGAAGAACAGCAAGGGGCCGGGGAATTTCCGAAACCTTTTCATGTACGCG 27250 ||||||||| ||||| |||||| ||||| || ||||| ||||| ||| || |||| Sbjct 596 CGCGAGGCGCTGAAGGGGGCCAAGGGACCGGGCAACTTCCGCAACCTGTTCCTGCACGCC 655 Query 27251 CCGAACGGCAAGAAAGACGGCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGAC 27310 ||| ||||||| || ||| | |||| |||||||| ||||||||| |||| || ||| Sbjct 656 CCGGGCGGCAAGGCCGAGGGCCTAAAGCTGATTCCGGTCTCCGAGGTCGCGGCCAAGGAC 715 Query 27311 GAGTTC 27316 || ||| Sbjct 716 GACTTC 721 >seq15326 Length=957 Score = 132 bits (146), Expect = 1e-26 Identities = 248/358 (69%), Gaps = 5/358 (1%) Strand=Plus/Minus Query 23902 TCGTCGG-CGATACCTTGCGGCCGGAGAACGGCGAGGCGGTCGGGTT-CTGAGCTGCGAA 23959 ||||||| | | ||||||| ||| |||||| ||| |||| || ||| || ||||| Sbjct 369 TCGTCGGGCTGTTCCTTGCGCGCGGCGAACGGGTTGGCTTTCGGATTGCTG-GCCGCGAA 311 Query 23960 AGAAAGGATTTCGGTGCCGAGGCTCGCGGGGCTATCGGTCACGGCGAGGCCGATGAGATA 24019 || ||||| ||||||||||| || ||| | ||||| ||||| |||||||| ||||| Sbjct 310 CTGCAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCGATCAGATA 251 Query 24020 CGCCTGTTTCGTGTCGGCGAATGACGGGTCGATTTCGCACGAGGTGTAAATCTTTTGCTT 24079 |||| | ||||||||||| ||| | |||| |||| |||| ||||| || Sbjct 250 GGCCTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATCTTCTGGCG 191 Query 24080 CGCCTTCGTCATCGCGACCAGCTCGGCAGTCGGCTCGATTTGCGCGAACAGTCCGAGCTT 24139 | ||| | ||||||| ||| ||| | || || ||| ||||| | || ||||||| Sbjct 190 CTTCTTGTTGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGGGCGAGCTT 131 Query 24140 GCCGGCGAATTCGCCCGTGAGTTCTTGCGTTTCGACCGCGAGCACGTCGCCGTATGCCTT 24199 |||| || | || |||| || | |||||| ||||||||||| || || Sbjct 130 CTTGGCGCCGCCGATCTCGACCTCTTCGGTCTTGACCGCCAGCACGTCGCCATACGCGCC 71 Query 24200 GAACGGGC-CATCGGGCACGATGCCGCGATAGTGTTCGAGGTTCACGCGTGCGCCGTA 24256 ||| || |||||| | |||||| ||| || | ||||||||| || ||||| Sbjct 70 GAATTCGCTGCTCGGGC-TGTAGCCGCGGATGTGCTCCATGTTCACGCGGGCTCCGTA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103263406936274