Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19325 122 7e-22 seq15663 109 4e-18 seq15823 95.1 1e-13 seq4840 95.1 1e-13 >seq19325 Length=667 Score = 122 bits (134), Expect = 7e-22 Identities = 106/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || || || || || ||||| |||||||| |||||||| ||||| |||||||| Sbjct 5 GGATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGA 64 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 | | || |||||||| || |||||||| ||||||||||| ||||| || || ||||| Sbjct 65 TTCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGC 124 Query 550516 ACTTGCATATGG 550527 |||| ||||| Sbjct 125 TATTGCTTATGG 136 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 361699 TCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAG 361758 ||||| ||||||||| | | ||| |||||||||||||| || || | |||||| || Sbjct 142 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACATTTAG 84 Query 361759 TCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGG 361818 || || ||| | |||| ||||||||| ||||||| ||||||||| ||||| || Sbjct 83 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTATGCGGG 24 Query 361819 AACAGTAATCACTGC 361833 || ||||| || || Sbjct 23 GACTGTAATAACAGC 9 >seq15663 Length=922 Score = 109 bits (120), Expect = 4e-18 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 || |||||||| || | ||||||| ||| ||||||||||| ||||| || ||||| Sbjct 327 AGCTGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAAT 268 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGG----AAAC--TGAACATTTAGTTGGTGAT 550135 | | || ||||| || || | ||||| | || | ||| | | | |||||||| Sbjct 267 CGGATCACGCCATCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGAT 208 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| |||| || ||||| |||||| ||||||||| ||||||| | Sbjct 207 GCAGCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTG 148 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| || | || ||||| ||||| || |||||| || |||||||||||| Sbjct 147 ATTGGCCGAGAGTACAAGGATTCAACTGTACAACAAGATATCAAACATTGGCCTTTC 91 >seq15823 Length=906 Score = 95.1 bits (104), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 552465 TTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCT 552524 || |||||||| ||||| ||||||| || | || || ||||| ||||||||| Sbjct 9 TTGACTAAAGACAATAACTTGCTTGGTAAATTCGAGTTGTCTGGAATTCCGCCTGCTCCT 68 Query 552525 CGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTG 552584 || || || |||||||||||||| || || ||||| || ||||| || ||| ||||||| Sbjct 69 CGCGGTGTGCCGCAAATTGAAGTCACGTTTGATATTGACGCCAACGGTATTCTGAATGTT 128 Query 552585 ACTGCTTGTGATAAATC 552601 |||| |||||||| Sbjct 129 TCTGCCCAGGATAAATC 145 >seq4840 Length=3826 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | |||||||| ||||| || |||||||| || || ||||| | Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| ||||||||||| | Sbjct 2474 TTTACATTCTCAATTGTATCTGAG-GATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2532 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||| Sbjct 2533 AGTTTTGACAAAAATTTGCAT 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028028728486870