Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq11176 141 7e-29 seq4840 122 7e-23 seq18158 109 4e-19 >seq11176 Length=1573 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || ||||| ||||||| | || | | || |||| ||| Sbjct 699 TGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGC 640 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||||||||| || |||||||| ||| Sbjct 639 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 580 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||| ||||| | |||||||| || || | ||||| || || Sbjct 579 GCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTC 520 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| |||||||| |||||||| Sbjct 519 AAAGTCTTTACAAAAATCTGCAT 497 >seq4840 Length=3826 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 2412 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 2471 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | || | || || || | ||| || ||||| || | |||||| || |||| Sbjct 2472 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2531 Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472 ||||||| ||||| || |||||||| Sbjct 2532 AAGTTTTGACAAAAATTTGCATGGT 2556 >seq18158 Length=729 Score = 109 bits (120), Expect = 4e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| || | ||||| ||||| || || || |||||||| || ||| Sbjct 6 AAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGA 65 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | |||||||| | || ||||| | |||| ||| ||| Sbjct 66 ATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTG 125 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||||||||| || |||||| Sbjct 126 CCCGTCAATGTTTTTACAAAAATTTGCATG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396162667264791