Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq5 150 5e-32 >seq5 Length=40538 Score = 150 bits (166), Expect = 5e-32 Identities = 419/629 (67%), Gaps = 33/629 (5%) Strand=Plus/Minus Query 18055 AAATCAACCACAGTGCAGGTGACCGATTCCGTTGGCATGCTGGAAACCTATGCTGAAGTC 18114 ||||| ||||| | ||||| || || || ||| ||||| | || |||||||| Sbjct 40456 AAATCCACCACCGCACAGGTTGATGAAGCCTGCGGTATGTTGGAAGCGTACTCTGAAGTC 40397 Query 18115 GATAAGTCACTGGCTGATCTGAACGGCAATACCGCCGAATTCCGCCTGTCTGAAGACCGC 18174 |||||| ||||| || |||||||| |||||||| |||||||| |||| |||||| || Sbjct 40396 GATAAGGATCTGGCCGAACTGAACGGTAATACCGCGCAATTCCGCTTGTCCGAAGACAGC 40337 Query 18175 GCATTTATTGAAGCGATGAATCAGCAGATGGCGCAGACGCTGTTTTATGGTGATTCCAGC 18234 ||||| | ||||| |||||||| |||||| || |||||||| ||| | || || Sbjct 40336 GCATTCCTGGAAGCCATGAATCAAACGATGGCATCCACTCTGTTTTACGGT-AACCCGGC 40278 Query 18235 -GTTAACCCTCAGCAGTTTATGGGACTGTCCTCCCGCTATTCCAGCCTGTCTGCGGGTAA 18293 ||||| |||| || | || ||| | | || ||||||||| ||| ||||| Sbjct 40277 AAACGACCCTAAGCAATTCTTAGGTCTGGCAACACGTTATTCCAGCACCAGTGCAGGTAA 40218 Query 18294 TGCTCAGAACATCATTGATGCTGGTGGCACGGGTACAGATAACACCTCTATCTGGTTAGT 18353 | ||||| || | | | ||||||| | ||| | | ||||| || |||| | || Sbjct 40217 CGGCCAGAATATTCTGAAAGGTGGTGGCTCCGGTTCTGTGAACACATCCATCTATCTGGT 40158 Query 18354 GGTGTGGGGCGAAAACACCGTGCATGGCATCTTCCCGAAAGGGCAGAAGGCTGG---CAT 18410 || ||||| |||||| | || | ||||||||||| || || || || Sbjct 40157 TGTCTGGGGTGAAAACTCTGTTTTCTGTCCATTCCCGAAAGGTTCCAAAGCCGGTCTGAT 40098 Query 18411 CCAGATGGAAGATAAAGGCCAGGTGACACTGGAAGATGCGAATGGCGGCAAGTACG---- 18466 ||| |||||| || | | | |||| || || | |||| || Sbjct 40097 CCA---TGAAGATCTCGGTCTG--AATACTG---TCTGGGACAGCAACCAAGCGCGTTAT 40046 Query 18467 AAGGC-TACCGTACCCATTACAAATGGGACAACGGGCTTGCTCTGCGTGACTGGCGTTAT 18525 |||| ||||||||||| || | ||| | || || || | | | || ||||| ||| Sbjct 40045 CAGGCTTACCGTACCCACTATCAGTGGAAAAATGGTCTGGTTGTTAAAGATTGGCGCTAT 39986 Query 18526 GTTGTTCGCATTGCAAACATCGATGTCAGCAATCTTTCAGAACCTTC--CTCTGCAGCAA 18583 |||||||| ||||| |||||||| || | | ||| || | | || ||||| Sbjct 39985 GTTGTTCGTATTGCGAACATCGA---CACGA--CCATCACAAACAACAACTTGGCAGCGG 39931 Query 18584 AT---ATTGCGAAGTTGATGGTTAAAGCACTGCATCGCATTCCAAACCGTGGC-ATGGGC 18639 || ||||| | ||||| || ||| |||| || || || | |||| ||||| Sbjct 39930 ATCTGATTGC---GCTGATGTCGCGTGCGCTGGATCGTATCCCGAATC-TGGCAATGGGT 39875 Query 18640 CGCCCGGTGTTCTACATGAACCGCACTGT 18668 ||||| |||||||||||||||||||| || Sbjct 39874 CGCCCTGTGTTCTACATGAACCGCACGGT 39846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143146454560876