Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_019488.1 Length=34117 Score E Sequences producing significant alignments: (Bits) Value seq9234 210 5e-50 seq17740 107 4e-19 >seq9234 Length=2011 Score = 210 bits (232), Expect = 5e-50 Identities = 757/1160 (65%), Gaps = 33/1160 (3%) Strand=Plus/Plus Query 12841 AGTGCATGCATCGTTGCCCAGGCCAAATCTGCGTGGCTGGCCTCTTCGCTGCGGCTGGCT 12900 || || |||||||||||||| || | ||| ||||| | | ||||| ||||| | Sbjct 182 AGCGCGTGCATCGTTGCCCACGCAAGATCCGCGTGTCCCGTGACTTCGGAGCGGCCCGAG 241 Query 12901 TCATAGGTTGGACGGTT--GCCGCTGGCGGTGGTGGCGCGGCGGATAGCCATAAAGGACT 12958 || ||||| | | || ||||||||||||| |||| ||| ||||| |||| | Sbjct 242 TCGTAGGTC--ATGTTTCGGCCGCTGGCGGTGAGCACGCGCTTGATGGCCATGAAGGCCG 299 Query 12959 GCGCAATGTCGGTGTGCCCAGCGTCAAACTCCAGACGGCGGTGGCTGATAATGTCGTACG 13018 || |||||||| ||||| || |||||||| || | | | ||| | | | || Sbjct 300 CGGCGATGTCGGTCCATCCAGCATCGAACTCCAGTCGCCCCTTGTGGATGACCTGTTGCG 359 Query 13019 CCTTGAGCACCAGGGCATTTTTGACGTTAGGGTTGTAGACAAACTCCCGCACGGCAGGAA 13078 |||| ||||||||| | || || | | |||| | || ||| |||| Sbjct 360 CCTTCAGCACCAGGCGCTGCTTCACCTCGATGCTGTACTGGTAGCCCTTCACCTGGGGAA 419 Query 13079 AGAACGCTTTTACGTTCTCATAAACACCGTGCCCGACGCCGGTCGAGTCGATGCCGATAT 13138 ||||| | ||| ||| | || || || | ||||||| |||||||||||||| Sbjct 420 AGAACTTCTCGACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATAT 479 Query 13139 AGGTCACGTTGTACTGCTGCGTCAGTTTTTTGATAGCATCAGCCTGGGCGCGAAAGTCC- 13197 |||||||| ||||| || | ||| || || ||||| || |||||| Sbjct 480 GCACGACGTTGTATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCG 539 Query 13198 ATCCCGCGCCACTGATGACGCTCCAGAATTCGGAACTTCCCGCCAGGTACAGTTGGCGGT 13257 | ||| | |||| | || | || || |||||||| ||||| || || ||||| Sbjct 540 AGCCCTTGA-ACTGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGC 598 Query 13258 GCCATAACCACGCAGCCTGCGCTGTCACCGTTCTGCGTACCTTTTGCCGGGTCATAACCG 13317 || | ||||| ||| ||| | || || || | || ||||| || ||| Sbjct 599 GCGACCACCAC-CAG--TGCAGCGGCATCGCCCTTG------TCTGATGGGTCGTAGCCG 649 Query 13318 ATCCACACTTCGC---GCCAGCCAAACGGGCGCAGCGCCAGCGCCTGAAAATCGGTCCAG 13374 | |||||| || | ||| | || || | | |||| || | ||| |||| Sbjct 650 ACCCACAC--CGGAAAGTGAGCGTAG-GGCCGAATCCAAAGCGGCTTGACGTCGCTCCAC 706 Query 13375 ACTTCCCAGCTGTCCACCATGCACGCCTGCAGCT-CGCTGAGCGGGAACACGGACGCGAG 13433 | ||||||||||| | |||||| ||||||| || ||| |||| ||||| ||| | Sbjct 707 ATCTCCCAGCTGTCGATCATGCAAGCCTGCATCTGCGC-CAGCGTGAACAGCGACAAGCT 765 Query 13434 ATCGTCCACGAACTCACACATCAGCAGGTTCTGGTATTCGTCCGGGCTGTACTCCATGCG 13493 ||||| | ||||| ||||| | ||||||| | | ||||| ||||||| ||| ||| Sbjct 766 GTCGTCGATGAACTGGCACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCG 825 Query 13494 CAGCTGGTCGAGGTCGAACAGGTTACAG-CCGCCGCGCACCGCATCCTCCACGGTGACGA 13552 ||||| | ||| |||||||| | || || |||| || || || ||||| ||||||| Sbjct 826 CAGCTCGGCGATATCGAACAGATCGAAGCCCATCGCG-ACGGCGTCTTCCACCGTGACGA 884 Query 13553 TCTGGCGGTACTGCCCGTCAGGGCAGAGCAGGCCG-CGCGCAAGGTTGCTGTGGGTCAGG 13611 | | ||| | | | || ||| |||| |||| ||||| || | ||||| | | Sbjct 885 TGTCGCGCCATTTGCGATCGAGGCCCAGCATGCCGCCGCGC-AGCATCTTGTGGCTGGTG 943 Query 13612 TTAATATCCACCTTGTCCGCTTTGGCACGGCCCCGGTTAAACAG-CG-CACCGGACCAGA 13669 | || || | |||| ||| || |||||| ||| | | || | |||| ||||| Sbjct 944 TCGATGCGGACGTGGTCCTTTTTCGCGCGGCCCTTGTT--CCGGTCGTCGCCGGTCCAGA 1001 Query 13670 ACGGATAAGCACTGTGGGTCAGGCTGGAGGGCGTGGAAAAATAGGTTTGTCGCCATTTTT 13729 || | || ||| | || |||||||| || |||||||| | ||||| | | Sbjct 1002 ACCCGAAGGCCTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCT 1061 Query 13730 TGTGAATGGCCATACCGGAAGCCACTTTGCGCAGTTCCTGGAATTTTGGTATCCAGAAAT 13789 |||| ||||| | |||| ||| | | | ||| ||| | ||| ||| Sbjct 1062 TGTGCGAAGCCATCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGTGGGACCCAAAAAA 1121 Query 13790 ATTCATCCAGGTACAGATTACCGTGATAGCTCTGCGCCGTGCGGGCGTTGGTGCCGAGAA 13849 ||||||| | ||| | | |||||||||||||| ||||| |||||||||||| || | Sbjct 1122 ATTCATCGAAGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGA 1181 Query 13850 AGTACAAAGCGGCCCCATTGGGTAACACCATGGGATCGCCTTTCAGCTCAACATCCACCT 13909 || || |||| || || | | ||| ||||| ||||| || || || |||| Sbjct 1182 AGATCAGCTCGGCGCCGTTCCACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCT 1241 Query 13910 CTTTTGCAAAGTCGATGATGTA-CTGCTTAAAGACGTGCGCCTGTGCCTTACTGGCAGAA 13968 |||| || ||||||| |||||| |||| || ||| ||||| ||||| || || Sbjct 1242 CTTTCGCGAAGTCGACGATGTAGCTGC-GGAACTGGTGGGCCTGCGCCTTCGACGCCGAC 1300 Query 13969 AGGAAAATCTGGTTGCGTCC 13988 | ||||| || |||||| || Sbjct 1301 AAGAAAAGCTTGTTGCGCCC 1320 >seq17740 Length=755 Score = 107 bits (118), Expect = 4e-19 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 11950 GCTCACGTTCTTGATGTTCAAAAACTCATCCTTAGCTGCAACCTCCGAAAGTGGAATGAT 12009 ||||||||| |||||| | || || ||||| || || ||||| || | ||||| | Sbjct 742 GCTCACGTTTTTGATGGCCGCGAAGTCGTCCTTGGCCGCGACCTCGGAGACCGGAATCAG 683 Query 12010 TTGGATACCGTCCTTTTTACCGTTGGGCGAGTACATAAACAGGTTGCGGAAGTTGCCCGG 12069 | | || || || ||| || | || || ||||||||||||||||||||||| Sbjct 682 CTTTAGGCCCTCGGCCTTGCCGCCCGGGGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGG 623 Query 12070 CCCTTTGGCGCTTTTCATTGCCTGGCGGATGTTGTTCACGTCCTCCTGGTTCTGCGC--G 12127 || ||||| | |||| |||| ||| | | | |||| || || ||| | | Sbjct 622 TCCCTTGGCCCCCTTCAGCGCCTCGCGTAGTGCATCCGCGTCGGCC--GTGCTGACCTGG 565 Query 12128 GCGTCAGTCATGTACATGATGAAGCCTGCGTGGCTACCGTTAATGTAGTACTTCCGGCGG 12187 ||||| | || ||| | ||||||||| ||||| ||||| |||||||||||| ||| Sbjct 564 GCGTCCGACAGGTAGAGGATGAAGCCGGCGTGCGACCCGTTGGCGTAGTACTTCCGCCGG 505 Query 12188 AACAGTGTTGCGGACTCATTCAGCAGGGCGGAAGGGATAGCTGACAGATATTCCGGCAGA 12247 |||| || || | ||| || ||| ||| || | | || | || || |||| | Sbjct 504 AACATGGTGGCTGCCTCGTTGAGCCAGGCCGACTGCAGCGCGCTGATGTACTCGGGCAAA 445 Query 12248 CCGTAAATCTCCTGGTT 12264 ||||| ||||| || || Sbjct 444 CCGTAGATCTCTTGATT 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109021767867074