Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq9234 221 2e-53 seq17740 113 9e-21 seq15326 98.7 2e-16 >seq9234 Length=2011 Score = 221 bits (244), Expect = 2e-53 Identities = 847/1309 (65%), Gaps = 32/1309 (2%) Strand=Plus/Minus Query 10957 CATCCTGAAGTCGCGCCAGATAGGTGCCACGTTCTACTTTGCCCGCGAGGCGCTGATTGA 11016 ||||||||| |||| ||||| ||||| || | |||||| | |||||||||||| | Sbjct 1393 CATCCTGAAAGCGCGGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCTC 1334 Query 11017 CGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAAGGCGCAGGCGCACGT 11076 || || ||||||||| || | || |||||||| ||||||||||| ||| Sbjct 1333 GGCCGCGAAAGAGGGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCA 1274 Query 11077 CTTTAAAAACTACATCATTGACTTTGCCCGCCAGGTGGACGTTGACCTGAAGGGCGACCC 11136 || | ||||||| | ||||| || |||| ||||| |||||||||||||| Sbjct 1273 GTTCCGCAGCTACATCGTCGACTTCGCGAAAGAGGTCGACGTCGACCTGAAGGGCGAGAA 1214 Query 11137 GATTGTGCTGCCGAACGGTGCCCGCCTGATTTTTCTTGGCACCAACGTGCGCACCGCGCA 11196 || |||| |||||| ||| ||||| || ||||||||||||| || || || Sbjct 1213 CATCAAGCTGTGGAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCCA 1154 Query 11197 GAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGATACCGAAATTCCAGGAGCT 11256 |||||| |||| || | || ||||||||| ||| ||| | || ||| | || | Sbjct 1153 GAGCTATCACGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCCACGCTTCAGGCAGAT 1094 Query 11257 GCGAAAGGTCGCCAGCGGCATGTCGCTGCATAAAAAGTGGCGCACCACCTACTTTTCCAC 11316 ||| | ||||| | ||| | ||| || | ||||||| ||||| || || || Sbjct 1093 CAACAAGCTGGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGAC 1034 Query 11317 GCCGTCGAGCCTGTCGCACTCCGCTTATCCGTTCTGGTCGGGCGAGCTGTTCAACAAAGG 11376 ||| ||| |||||||| || | ||||||| | ||||| ||| |||| Sbjct 1033 GCCCTCGGCGATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCGGAAC-AAGG 975 Query 11377 GCGGCGCAGCAAAGCCGATCGCATCGAAATCG--ACCTGTCGC-ATACGC-ACCTGGCAA 11432 || |||| |||| || | | || |||| ||| | | | | | || | ||| Sbjct 974 GCCGCGCGAAAAAG--GACCACGTCCGCATCGACACCAGCCACAAGATGCTGCGCGGC-- 919 Query 11433 AAGGCGCGCTGTGCGGTGACGGCCAGTGGCGGCAGATTGTGACGGTTGAGGATGCGCTGA 11492 ||| |||| || || || | ||||| | || || ||||| || || || | Sbjct 918 --GGCATGCTGGGCCTCGATCGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCG 861 Query 11493 CCGGCGGCTGTAACCTGTTTGACCTCGACCAGCTCCAGCTGGAATACAGCC-CGTCGGAA 11551 | |||| | ||||| || ||| | |||| | ||||||||||| || | || Sbjct 860 CGATGGGCTTCGATCTGTTCGATATCGCCGAGCTGCGCGAGGAATACAGCCTCGAC-GAG 802 Query 11552 TACCAGAACCTGCTGATGTGTGAGTTTGTGGACGATGAGGCGAGCG-TGTTCCCGTTCGC 11610 | | ||||||| | ||||| |||| | ||||| || || ||||| || | || Sbjct 801 TTCGCGAACCTGTTCATGTGCCAGTTCATCGACGA-CAGCTTGTCGCTGTTCACGCTGGC 743 Query 11611 CGAGCTGCAGACCTGCATGATCGACAGCCTGGAGGAATGGAGCGACTTTAACCCGTACCT 11670 || ||||| | ||||||||||||||| |||| ||||||||| | || ||| Sbjct 742 GCAGATGCAGGCTTGCATGATCGACAGCTGGGAGATGTGGAGCGACGTCAAGCCGCTTTG 683 Query 11671 GCCGCGCCCGTTTGATTACCGCCCGGTCTGGATTGGCTACGACCCGTCGCACACCGGCGA 11730 | || || | | | || ||||| ||| | ||||||||||| || ||| ||||| Sbjct 682 GATTCGGCCCTACGCTCACTTTCCGGTGTGGGTCGGCTACGACCCATCAGACAAGGGCGA 623 Query 11731 CAGCGCAG-GCTGTGCCGTTATCGCGCCGCCGCTGGTTGCGGGCGGCAAGTTTCGCGTGC 11789 ||| | ||| | || |||||||||||| || | ||||||||||| ||| | | Sbjct 622 TGCCGCTGCACTG-GTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGTTCCGCATCC 564 Query 11790 TGGAGCGTCACCAGTGGCGGGGCATGGACTTTGCCGCGCAGGCAAAATCCAT--TGAGGA 11847 | | || | |||| |||| |||||| | |||||||| | |||| ||| Sbjct 563 TACATCGCGAGCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCATCCGTCGGA 504 Query 11848 CTTAACGAAAAAATACACCGTCGAGTATATCGGCGTGGATGCGACCGGCATCGGCCAGGG 11907 | || | |||||| ||||| | |||||||| | || ||||||| | || || Sbjct 503 --TCACCCAGCAATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGGGTGCTGG 446 Query 11908 CGTTTTCCAGCTGGTTCGCCAGTTCTACCCGGCGGCGCGTGAAATCCGTTACTCGCCGGA 11967 ||| |||||| | || |||||| || || | | || ||| || Sbjct 445 CGTGTTCCAGATCGTCGAGAAGTTCTTTCCCCAGGTGAAGGGCTACCAGTACAGCATCGA 386 Query 11968 AGTGAA-AACCGCGATGGTGCTGAAGGCAAAAGACACCATCAGCAGCGGACGCCTGGAAT 12026 ||||| | ||| ||||||||||||| || | |||| || || || ||||| | Sbjct 385 GGTGAAGCAGCGC-CTGGTGCTGAAGGCGCAACAGGTCATCCACAAGGGGCGACTGGAGT 327 Query 12027 ACGATGCGGGCCAGACCGACATTACGCAGTCTTTTATGGCAATCCGCAAAACCATG---A 12083 |||||| || ||||||||| | | | || ||||| || ||| | || | Sbjct 326 TCGATGCTGGATGGACCGACATCGCCGCGGCCTTCATGGCCAT---CAAGCGCGTGCTCA 270 Query 12084 CCGCCAGCGGCAACCGCTCCACCTATGAGGCGAGCCGCAGCGAGGACGCCAGCCACGCCG 12143 ||||||||||| | ||||| || || ||||| ||| | | | | ||||| | Sbjct 269 CCGCCAGCGGCCGAAACATGACCTACGACTCGGGCCGCTCCGAAGTCACGGGACACGCGG 210 Query 12144 ACGTCGCCTGGGCAATCATGCACGCCCTGCTTAACGAACCGCTGACCGCCGCCAGCGGCG 12203 | | || ||||||| |||||||| || |||||| | || ||| || | | || Sbjct 209 ATCTTGCGTGGGCAACGATGCACGCGCTCGACAACGAATCACTCGCCGGCGACGTGGTCG 150 Query 12204 GCGCTAACCCTTCAATTCTGGAATTTTACTGATGAGCAAACGCAGGGGC 12252 ||| | | ||| |||| ||| |||||||||||||| |||| Sbjct 149 GCGGCAGC---TCACGCATGGAGATTTTTGGATGAGCAAACGCAAGGGC 104 >seq17740 Length=755 Score = 113 bits (124), Expect = 9e-21 Identities = 227/334 (68%), Gaps = 12/334 (4%) Strand=Plus/Plus Query 12748 AACCAGGAGCTGTACGGCCTGCCGGAATATCTCAGCGCGTTAAACTCTGCCTGGCTGAAT 12807 || || ||| | ||||| |||| || || |||||||| | | || |||||||| || Sbjct 428 AATCAAGAGATCTACGGTTTGCCCGAGTACATCAGCGCGCTGCAGTCGGCCTGGCTCAAC 487 Query 12808 GAAGCGGCCACGCTGTTTCGCCGCAAGTATTATCAGAACGGCGCACACGCAGGCTACATC 12867 || || ||||| |||| || || ||||| || ||||| | ||||| |||| |||| Sbjct 488 GAGGCAGCCACCATGTTCCGGCGGAAGTACTACGCCAACGGGTCGCACGCCGGCTTCATC 547 Query 12868 CTGTATATGACCGACGCGGCGCAGAGCAGCAGCGATATCGAC-CGGATGCGCCAGGCGAT 12926 || || || | ||||| ||| ||||| | |||| ||||||| | | |||| Sbjct 548 CTCTACCTGTCGGACGCC---CAGGTCAGCACGGC---CGACGCGGATGCACTACGCGAG 601 Query 12927 GCGCGACACG-----AAAGGCCTGGGTAACTTCCGCAATCTGTTTATGTACGCGCCGAAC 12981 |||| | | || || | ||| ||||||||||| ||||| || |||| ||| | Sbjct 602 GCGCTGAAGGGGGCCAAGGGACCGGGCAACTTCCGCAACCTGTTCCTGCACGCCCCGGGC 661 Query 12982 GGCAAGCCGGACGGAATTAAGATCCTGCCGCTCAGCGAGGTGGCGACGAAAGATGATTTC 13041 |||||| | || || | ||| | | ||| || |||||| ||| | || || || ||| Sbjct 662 GGCAAGGCCGAGGGCCTAAAGCTGATTCCGGTCTCCGAGGTCGCGGCCAAGGACGACTTC 721 Query 13042 TTTAACATCAAAAAGGCCAGCCGTGACGACCTGC 13075 ||||||||| | ||| |||||| ||| Sbjct 722 GCGGCCATCAAAAACGTGAGCAAGGACGACGTGC 755 >seq15326 Length=957 Score = 98.7 bits (108), Expect = 2e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 9916 CAGAATCTCAGTGCCGAGGCTTGCCGGGTCGTCGGTCACGGCCAGACCAACCAGATAGGC 9975 ||| || |||||||||||||| || |||| |||||| |||||||| || | ||||||||| Sbjct 307 CAGCATTTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCGATCAGATAGGC 248 Query 9976 TTCGCCGGTGTCGGCAAACGCCGGATTCACCTCAATGGAGGTGTAAATTTTCTGGCG 10032 | | |||||||||| ||| ||| ||| || | ||| |||| || |||||||| Sbjct 247 CTTGTCGGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATCTTCTGGCG 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94456313801556