Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19325 145 5e-29 seq11176 111 1e-18 seq15663 100 2e-15 seq20998 95.1 8e-14 seq15823 89.7 3e-12 >seq19325 Length=667 Score = 145 bits (160), Expect = 5e-29 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || ||||| || || ||||| ||||||||||| ||||| ||||| ||||||||| Sbjct 6 GATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGAT 65 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 | || |||||| ||||| |||||| |||||||||| || |||||||||||||| || Sbjct 66 TCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCT 125 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | || ||||| Sbjct 126 ATTGCTTATGGTTTGGACAAGAA 148 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 290821 TCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAG 290880 ||||| |||||| | | | ||||||||||||||| || ||||| | || |||| || Sbjct 142 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACATTTAG 84 Query 290881 ACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGG 290940 ||| |||||| | |||||| ||| || || ||||| | ||||||||| || || || Sbjct 83 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTATGCGGG 24 Query 290941 GACTGTAATAACAGC 290955 ||||||||||||||| Sbjct 23 GACTGTAATAACAGC 9 >seq11176 Length=1573 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || || || || || ||| || || ||||||||| | | || Sbjct 718 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 659 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| || ||||| || || || || ||||| || ||||| || Sbjct 658 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 599 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||||| ||||||| ||| |||||||||| | | | ||| | Sbjct 598 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA-CTTCGA 540 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| || | |||||| || ||||| || Sbjct 539 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 500 >seq15663 Length=922 Score = 100 bits (110), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| ||| ||||| ||||| ||||| || |||||| | | || |||||||| | Sbjct 308 AAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGGATCACGCCATCATACG 249 Query 474438 TTTCTTTTACTG----AAAC--TGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG 474491 | | || |||| || | ||| | ||||||||| ||||| || ||| |||| Sbjct 248 TAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCAGCCAAAAATCAGTTAA 189 Query 474492 CATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATG 474551 || | ||||| | |||||| ||||||||| |||| | ||||||| || | | | | Sbjct 188 CAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATTGGCCGAGAGTACAAGG 129 Query 474552 ATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 || | ||||| ||| ||||| ||||||||||| Sbjct 128 ATTCAACTGTACAACAAGATATCAAACATTGGCCTTT 92 >seq20998 Length=594 Score = 95.1 bits (104), Expect = 8e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 ||||||| | ||||||||||| |||||| | ||||| || ||||||| ||||||||| || Sbjct 117 AGGTAATCGTACAACACCATCGTATGTTGCATTTACCGATACTGAACGTCTTATTGGCGA 176 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTT 474516 ||| || ||| |||||| |||| ||||| |||||| |||| Sbjct 177 TGCAGCCAAAAATCAAGTTGCAATGAATCCGCACAATACTGTTTT 221 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || |||||| || ||||||||||||| ||||||||| | || ||||| ||| Sbjct 373 ATTTCAGACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGAT 432 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAA---TGTTGGTGGTAAACCATATATAGAAG-- 474626 ||| |||||||| ||||| || | || || |||||||||||| || | | || Sbjct 433 ATGAAACATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACC-TAAAGTGCAGGT 491 Query 474627 -CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||||| | || || || || ||| | || ||| | ||||| || |||||||| Sbjct 492 TGAATACAAG--GGAGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTG 549 Query 474686 GCCAAAATGAA 474696 | |||||||| Sbjct 550 GTTAAAATGAA 560 >seq15823 Length=906 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 476048 TTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCC 476107 || |||||||| |||||| ||||| | || | | || ||||| |||||||| Sbjct 9 TTGACTAAAGACAATAACTTGCTTGGTAAATTCGAGTTGTCTGGAATTCCGCCTGCTCCT 68 Query 476108 AGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTT 476167 | || || || ||||||||||| || ||||||||||| || || |||||||| |||||| Sbjct 69 CGCGGTGTGCCGCAAATTGAAGTCACGTTTGATATTGACGCCAACGGTATTCTGAATGTT 128 Query 476168 ACTGCTTGTGATAAATC 476184 |||| |||||||| Sbjct 129 TCTGCCCAGGATAAATC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267151310661524