Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq11176 167 3e-36 seq19325 129 8e-25 seq18158 129 8e-25 seq12274 100 4e-16 seq20998 89.7 7e-13 seq15823 84.2 3e-11 >seq11176 Length=1573 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || | || || ||||| || || ||||| || ||| | || Sbjct 497 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 556 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || ||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 557 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 616 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||| || || ||||| || || || || || | | ||||| || Sbjct 617 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAAT 676 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| ||||| || || || ||||| ||||| | ||||| ||||| Sbjct 677 ATTCAGAAGGAATCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 723 >seq19325 Length=667 Score = 129 bits (142), Expect = 8e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 195704 AAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAG 195763 || ||||| ||| | || || || || ||||| | ||||||||||||||| || || || Sbjct 3 AAGGATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAA 62 Query 195764 GACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCT 195823 || | | ||| ||||| |||||||| ||| | |||||||| ||||||||||| ||| Sbjct 63 GATTCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCT 122 Query 195824 GCAATTGCTTATGGTCTGGACAAGAA 195849 || |||||||||||| |||||||||| Sbjct 123 GCTATTGCTTATGGTTTGGACAAGAA 148 Score = 107 bits (118), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||||||||| ||||||||||| |||||||| || |||| | ||||| | |||||| Sbjct 251 ATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATGGTATT 310 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 |||||||| ||| |||| ||||| ||||||||||| || ||| Sbjct 311 TTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGGT 352 >seq18158 Length=729 Score = 129 bits (142), Expect = 8e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | || || || || |||||| | || |||||| | || Sbjct 154 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 95 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || | || ||||||||||| || || ||||| || || || |||||| Sbjct 94 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCAG 35 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 || || ||||||||||||||||| || Sbjct 34 CAGCGCCTTATTTTTGCTGGTAAGCA 9 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| ||||| ||||| || ||||| ||||| | || || || Sbjct 505 GTGGTATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTAGAAGTGGAAG 446 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | || || || || || || ||||| || |||||||| | Sbjct 445 CATCTGACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAG 386 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 | ||||| ||| | || || || |||| Sbjct 385 ACCAGCAGCGATTGATCTTCGCGGGTA 359 >seq12274 Length=1369 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 195878 TTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTC 195937 || ||||| ||||||||||| |||||||| || | | | |||||| |||| | ||| Sbjct 320 TTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACTATTGATAATGGTGTTTTC 379 Query 195938 GAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||| ||||||| ||||||||||||| | |||||||||||||| || Sbjct 380 GAAGTATTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTTGA 429 >seq20998 Length=594 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 195488 GACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAG 195547 ||||| || || || |||||||| |||||| ||| ||| ||| ||||| || Sbjct 379 GACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGATATGAAA 438 Query 195548 GACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTT 195607 | ||| | | | |||| || | || | || ||| |||| | | ||||||| Sbjct 439 CATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCTAAAGTGCAGGTTGAATAC 498 Query 195608 CACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATG 195667 | || |||| ||| ||| |||| ||||| |||||||| ||||| ||| |||| ||| Sbjct 499 AAGGGAGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAAATG 558 Query 195668 AAGGAGACTGCGGAATCTTTCATGGGT 195694 |||||||| |||||| |||| ||||| Sbjct 559 AAGGAGACGGCGGAAGCTTTTCTGGGT 585 >seq15823 Length=906 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||| | ||||| ||| | || ||||| |||| || | ||||| || || ||| | Sbjct 30 CTTGGTAAATTCGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAA 89 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 || || ||||| ||||| || || ||||| || || | || |||| || | | Sbjct 90 GTCACGTTTGATATTGACGCCAACGGTATTCTGAATGTTTCTGCCCAGGATAAATCCACA 149 Query 196772 GGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATT 196831 |||||| | || ||| ||||||||||| || || || | || ||||| || || Sbjct 150 GGCAAACAAAACAAAATTACCATTACCAATGATAAAGGACGTTTGTCAAAGGATGAGATC 209 Query 196832 GAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 || || ||||| || || || || || |||| || ||| || || Sbjct 210 GAGCGGATGGTACAGGAAGCTGAGAAATACAAGGCAGATGATGA 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657665345541360