Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11176 107 3e-18 seq4840 104 3e-17 seq18158 87.8 3e-12 >seq11176 Length=1573 Score = 107 bits (118), Expect = 3e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || ||||| || ||| | ||||| || | ||| Sbjct 496 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 555 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || ||| || || ||||| || |||||||| || ||||| || Sbjct 556 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 615 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || |||| | ||| || |||||||| || || | || || || |||||||| Sbjct 616 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 675 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| || || ||||||| || Sbjct 676 TATTCAGAAGGAATCGACGCTGCA 699 >seq4840 Length=3826 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || ||||| ||||| ||||| | || |||||| || Sbjct 2553 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA 2494 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||||| || |||||||||||||||||||| || Sbjct 2493 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 2434 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | ||||||| ||| |||| Sbjct 2433 CAGCGGTTGATTTTTGCAGGTA 2412 >seq18158 Length=729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || || || || || |||||||| || | |||| Sbjct 154 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 95 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || || || |||||||| || |||||||| || Sbjct 94 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCAG 35 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 || | | |||| ||| |||||||| Sbjct 34 CAGCGCCTTATTTTTGCTGGTAAGCA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731652776890800