Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4840 116 7e-21 seq11176 107 3e-18 >seq4840 Length=3826 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| || | ||| || || || ||||| |||||||| || |||||||| Sbjct 2412 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 2471 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || |||||||| ||||| || || || ||||| ||||||||||||| Sbjct 2472 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 2531 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | || || ||||| Sbjct 2532 AAGTTTTGACAAAAATTTGCAT 2553 >seq11176 Length=1573 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || || | || |||| |||| || || || ||||| || | || Sbjct 679 AATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCG 620 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || ||||| || ||||| || || ||| ||||| ||||| Sbjct 619 CTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGT 560 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| || || ||||||||||| || || || || | || ||||| Sbjct 559 ATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 500 Query 172067 CATT 172070 |||| Sbjct 499 CATT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904864877825400