Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_021343.1 Length=35430 Score E Sequences producing significant alignments: (Bits) Value seq9234 187 6e-43 seq17740 122 2e-23 >seq9234 Length=2011 Score = 187 bits (206), Expect = 6e-43 Identities = 835/1296 (64%), Gaps = 44/1296 (3%) Strand=Plus/Plus Query 10373 CGAGGGGTTCGTTATCGAGCGCGTGAAGGCAGGCCCATGCGAGGTCAGCGTGGCCGATTT 10432 |||| | |||||| ||||||||||| | ||||| || || || ||||| || | Sbjct 165 CGAGTGATTCGTTGTCGAGCGCGTGCATCGTTGCCCACGCAAGATCCGCGTGTCCCGTGA 224 Query 10433 CTTCGTTACGCGCGGCGGTGTAGGTCATCTTCGTGCCGCTCGGCGTCATGGCTCGGCGGA 10492 ||||| || | | | ||||||||| || |||||| | || | | || || Sbjct 225 CTTCGGAGCGGCCCGAGTCGTAGGTCATGTTTCGGCCGCTGGCGGTGAGCACGCGCTTGA 284 Query 10493 TGGACAGGAACGATTGCGCGAGGTCGGTCATACCTGCGTCGAATTCCAGGCGCTTTTTCC 10552 ||| || ||| | |||| ||||||| || || ||||| ||||| ||| || Sbjct 285 TGGCCATGAAGGCCGCGGCGATGTCGGTCCATCCAGCATCGAACTCCAGTCGCCCCTTGT 344 Query 10553 CGATCACCGACATGC-CTTTCAGGACAAGGCGGTTTTTCACTTCGGGCGAGTAATTG-AT 10610 ||| ||| ||| | ||||| || ||||| | ||||| ||| ||| | | | Sbjct 345 GGATGACCTGT-TGCGCCTTCAGCACCAGGCGCTGCTTCACCTCGATGCTGTACTGGTAG 403 Query 10611 CGGTACGACGCGCGGGAAGAACTGGCGCACAAGCTGATGCACGCCGTGACCGATGCCGGT 10670 | | | || | || ||||||| || | ||| |||||| ||| | |||||| Sbjct 404 CCCTTC-ACCTGGGGAAAGAACTTCTCGACGATCTGGAACACGCCAGCACCCAGGCCGGT 462 Query 10671 CGTATCGATCGCGATATAGGTCACGTGGTAGCGCTGCGTCAATTCG-CGGATTTTCTCCG 10729 | | ||||| |||||| |||| ||| |||| || | | || ||||| ||| | Sbjct 463 CTTGTCGATGCCGATATGCACGACGTTGTATTGCTGGGTGA-TCCGACGGATGGCCTCGG 521 Query 10730 CCTGCGTTTCGAAGTCGATGCCCTTCCAACGATGCCGTTCGAGCACACGGAATTTTCCGT 10789 |||||| |||||||| |||||| | | | || | || | ||||| || ||| Sbjct 522 CCTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTCGCGATGTAGGATGCGGAACTTGCCGC 581 Query 10790 TCGGCTGCTCG-GGCGGGGCGATCACGACGCACCCGGCCGAGTCGCCAGTAAGGGCAGGG 10848 ||| | || ||||| |||| ||| || | || | ||||| | | ||| Sbjct 582 CTGGCA-CGCGCGGCGGCGCGACCACCACCAGTGCAGCGGCATCGCCCTTGTCTGATGGG 640 Query 10849 TCGTAGCCGATCCATACCGGCTTCCAGCCGAACGGCCGA-TCGAGCAACGGCTTCACGTC 10907 |||||||||| ||| ||||| || | |||||| || | | |||||| ||||| Sbjct 641 TCGTAGCCGACCCACACCGGAAAGTGAGCGTAGGGCCGAATCCAA-AGCGGCTTGACGTC 699 Query 10908 CGTCCACACGTCCCATGAATCGACCATGCACGCCTGTACGAGCCGGAAGGCGAACACCGA 10967 |||||| ||||| |||| |||||| ||||| | || | | ||||| ||| Sbjct 700 GCTCCACATCTCCCAGCTGTCGATCATGCAAGCCTGCATCTGCGCCAGCGTGAACAGCGA 759 Query 10968 TGAGGTGTCGTCCACGAACTGGCACATGTACAGGTTTTCGAAATCGGCGGGGCTG--TTC 11025 || ||||||| | ||||||||||||| ||||||| |||| ||| || ||||| ||| Sbjct 760 CAAGCTGTCGTCGATGAACTGGCACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTC 819 Query 11026 GTTGAGCGCAAGTCCTCCAGATC---CAGTTTCGTGAATCCGGATGCGATGGCATCCTCG 11082 | ||||| || | | ||| ||| | ||| || |||| ||| || || Sbjct 820 CT--CGCGCAGCTCGGCGATATCGAACAGAT---CGAAGCCCATCGCGACGGCGTCTTCC 874 Query 11083 GCCGTGACGATCTGCCGCCATTGCCCGTCGCCGCACTG-GCGCCCGCGTGCAAGCGACGT 11141 |||||||||| | ||||||| | ||| || | | ||| || || ||| | | Sbjct 875 ACCGTGACGATGTCGCGCCATTTGCGATCGAGGCCCAGCATGCCGCCGCGC-AGCATCTT 933 Query 11142 ATGGGAAATGTCGATCTCGACGCGCTCGTCGTCGGGACGGTCGCGGTTGAAGTCCGCGCC 11201 ||| ||||||| |||| | || | | | ||| | ||| ||| |||| Sbjct 934 GTGGCTGGTGTCGATGCGGACGTGGTCCTTTTTCGCGCGGCCCTTGTTCCGGTCGTCGCC 993 Query 11202 AGTCCAAAACGCATAGGCTTCGTGCGTCGTTGTGGATGGCGTAGAGAAGTGCGTCATCCG 11261 ||||| ||| | |||| ||||||| | | | || ||||| ||||| | ||| | || Sbjct 994 GGTCCAGAACCCGAAGGCCTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCG 1053 Query 11262 CAAATGCGAATGCGTCGCCATCCCCTTCGCTACCTTGTTCAGTTCGGC---AAACTTGCT 11318 | | ||| |||| |||||| | | || | |||||| | || || || | || Sbjct 1054 CCAGTGCTTGTGCGAAGCCATCGCACTGGCCAGCTTGTT--GATCTGCCTGAAGCGTG-G 1110 Query 11319 GACCCAGAAATACTCATCGAAATACAGGTCGCCGTTGTAGCTTTGGGCCGT----GCGTG 11374 |||||| ||| | |||||||| || | |||||||| ||||| |||||||| |||| Sbjct 1111 GACCCAAAAAAATTCATCGAAGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGT- 1169 Query 11375 AACTGGTGCCGAGAAAAATCAATTCCGCACCGTTCGACAACCGCATCGGATCGCCGGTTA 11434 ||||||| || || |||| || || |||||| ||| | || ||||| | | Sbjct 1170 ---TGGTGCCAAGGAAGATCAGCTCGGCGCCGTTCCACAGCTTGATGTTCTCGCCCTTCA 1226 Query 11435 GCTCAACCTGCGCAGCGTTCCACGCAAATTTCTGGATATACGAGCGGAACACGTGTGCCT 11494 | || || | | | || ||| || | ||| || ||||||| ||| |||| Sbjct 1227 GGTCGACGTCGACCTCTTT---CGCGAAGTCGACGATGTAGCTGCGGAACTGGTGGGCCT 1283 Query 11495 GTGCGCGGCTCGCCGAC-AGAAAAATCTGATTCGTGCCGGTTTCCAGCGCGCGCACGAGT 11553 | || ||||||| |||||| || | || || |||| | || | | || Sbjct 1284 GCGCCTTCGACGCCGACAAGAAAAGCTTGTTGCGCCCCTCTTTCGCGGCCGAG-AGCAGC 1342 Query 11554 GCCTCGTGCGCGAAATAGAACGTGGCGCCGATCTGTCGTGACTTCAGGATGTTGCGGCGG 11613 |||||| ||| || || | || || |||||||| || | ||||||||| ||| || Sbjct 1343 GCCTCGCGCGAAAAGTAATAGGTCGCACCGATCTGCCGCGCTTTCAGGATGGCGCGCAGG 1402 Query 11614 CGCAGGTGTCGATTCTCGAACCACGTGTTTTGATGG 11649 ||| ||| | | |||||||| ||| |||||| Sbjct 1403 CGCTGGTACTGCTGATCGAACCA---GTTCTGATGG 1435 >seq17740 Length=755 Score = 122 bits (134), Expect = 2e-23 Identities = 228/335 (68%), Gaps = 19/335 (6%) Strand=Plus/Minus Query 9503 TCACGTTCTTGATGTCGAAAAACTGGTCTTTCGCTGCAACCTCCGAAATCGGGATCAGTT 9562 ||||||| |||||| | || | ||| || || || ||||| || | ||| ||||| | Sbjct 740 TCACGTTTTTGATGGCCGCGAAGTCGTCCTTGGCCGCGACCTCGGAGACCGGAATCAGCT 681 Query 9563 ---GGACCGCGCCTTTTTTCGCCGCCGCTGTTTCGCGCGGCCGAGTGCAGAAACAGGTTC 9619 || || || | || |||||| || ||| |||||| |||||||| Sbjct 680 TTAGGCCCTCGGCCTT----GCCGCC---------CGGGGC---GTGCAGGAACAGGTTG 637 Query 9620 CGGAAATTACCGATGCCCTTCGAGTCGCGTAACGCCTTCCGGATCGCGTCTACGTCGTCC 9679 ||||| || || ||||| | | | ||||| || | || || ||||| || Sbjct 636 CGGAAGTTGCCCGGTCCCTTGGCCCCCTTCAGCGCCTCGCGTAGTGCATCCGCGTCGGCC 577 Query 9680 GGGTCCATGTTCGGGTCGTTGAGGTACAGGATGAACCCGGCGTGCGAGCCGTTCGCGTAG 9739 | | | | | ||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct 576 GTGCTGACCTGGGCGTCCGACAGGTAGAGGATGAAGCCGGCGTGCGACCCGTTGGCGTAG 517 Query 9740 TAGCGGCGCCGGAACAGGGTGGCGGACTCGTTCAACCACGCGGATTGCAACGATGCGATG 9799 || |||||||||| |||||| | |||||| | ||| || || |||| || |||| Sbjct 516 TACTTCCGCCGGAACATGGTGGCTGCCTCGTTGAGCCAGGCCGACTGCAGCGCGCTGATG 457 Query 9800 TACTCGGGCATCCCGTACACCTCCTGATTCACGTC 9834 |||||||||| ||||| | ||| ||||| ||||| Sbjct 456 TACTCGGGCAAACCGTAGATCTCTTGATTGACGTC 422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113222172257152