Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq9234 224 2e-54 >seq9234 Length=2011 Score = 224 bits (248), Expect = 2e-54 Identities = 834/1284 (65%), Gaps = 45/1284 (4%) Strand=Plus/Plus Query 1498 CTGGAATACGCCGAGACCGAGGCCGGTCGCGTCAATGCCGATGTATTCGACGTTGTATTT 1557 |||||| ||||| ||| ||||||||| ||| |||||||| | |||||||||||| Sbjct 436 CTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTGTATTG 495 Query 1558 CTCAGTGAGCCTGCGGATGCCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTG 1617 || |||| || |||||| | || |||||||| | |||||| ||| || |||| | Sbjct 496 CTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTC 555 Query 1618 ACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCC 1677 || | || ||||| |||||||| || | || ||||||||||| || || | | Sbjct 556 GCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACCAGTGC 615 Query 1678 GGCACTGTCGCCAGTGTGGGACGGGTCGTAGCCAATCCAGACCGG-GCGCGAGCCGAACG 1736 || ||||| ||| || ||||||||||| | ||| ||||| | |||| | | Sbjct 616 AGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGCGTA--G 673 Query 1737 GGTGGTCGGCGAA-CGGGGCGAAGTC-CTCC-CATGTTTCCATCACGTCGACCATGCAGC 1793 || | | || ||| || ||| |||| ||| | ||| | ||||| |||||| Sbjct 674 GGCCGAATCCAAAGCGGCTTGACGTCGCTCCACAT-CTCCCAGC-TGTCGATCATGCAAG 731 Query 1794 GCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAAACA 1853 ||||| || | | | || ||| | ||| | ||||||| |||| |||||| |||| Sbjct 732 CCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATGAACA 791 Query 1854 GGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGGTGC 1913 ||||| || || || |||| ||| | |||| | ||| |||||||| | Sbjct 792 GGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCGCAGCTCGGCGATATCGAACAGATCGA 851 Query 1914 AGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGCAAA 1973 |||| || | |||||| || | ||||| || | ||||| | | || || | Sbjct 852 AGCCCATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATCGAGGCCCA 911 Query 1974 GAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCAGCACTGG 2033 | | || ||| ||| |||| ||| ||||||| || | ||| | | | Sbjct 912 GCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGT---CCTTTTTCG 968 Query 2034 CGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTGG 2093 |||| |||||||| ||||| | |||||| | || |||||| || || | Sbjct 969 CGCGGCCCTTGTTCCGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGCGACATCGCCG 1028 Query 2094 AAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGATGCGACTT 2153 | || ||||| || || || |||| ||||| ||||| ||||| | || | | Sbjct 1029 AGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCACTGGCCAGCT 1088 Query 2154 TGCGCAGCT-TCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTA 2212 || | || ||||| | |||| ||| || | |||||||| || | |||||||| | Sbjct 1089 TGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAAGTCGCCGTGA 1147 Query 2213 TGGCTTTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCG 2272 | ||| || || || ||| |||||||| || || ||||||| |||||||| | Sbjct 1148 TAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCCGTT-----CC 1202 Query 2273 ATAAC--AATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGT 2330 | | | || ||||| ||||||||||||| ||| | ||| || | || ||||| Sbjct 1203 ACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTCGACGATGT 1262 Query 2331 ATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGG 2390 | |||||| || ||||||| || ||||||| |||| || ||| ||| Sbjct 1263 AGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT-GCGCCCC 1321 Query 2391 TCTTGAGCGCGCG-CAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCGG 2449 |||| ||| || ||||| |||||||| |||||||| | ||||| || ||||| || Sbjct 1322 TCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGATCTGCCGC 1381 Query 2450 GATTTGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTAT 2509 | ||| || || |||| | || | | | | ||| | | |||| | | ||| | Sbjct 1382 GCTTTCAGGATGGCGCGCAGGCGCT--GGTACTGCTGATC-GAACCAGTTCTGATGGAAA 1438 Query 2510 TCGAA---AGACTGGTCGAAGAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAAA 2566 ||| |||| | || || | ||||||| |||| || ||||| Sbjct 1439 GGGAAGTTCGACTCG-CGCAG--CTTGGTTTCCAGCAGCGCGATCTGGTCGGCGCTG--- 1492 Query 2567 AAGTTCTTT----TTCGGC---CTCTTACGCTCCCCTTTGTTACGGTTGGCAACGTTGGG 2619 ||||| || || ||| | ||| || | | ||| || || | ||| || Sbjct 1493 -AGTTCGTTGCGCTTGGGCTTGCGCTTCGGCGCGGCATTG---CGCGCCGCGATGTTCGG 1548 Query 2620 GTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAAT 2679 || | ||| | ||| |||||||| ||| | |||||||||| ||||| | Sbjct 1549 ATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGCGCTCCAG 1608 Query 2680 CTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGCCTGACTTTTGCGGCTTGGCGAT 2739 ||||||||| || ||||||||||| ||| |||||||||| | ||| | || ||| ||| Sbjct 1609 CTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCTTCAGGAT 1668 Query 2740 GAGCTGAATCAGGCGCGCCTCAAG 2763 ||||| ||||| | | ||||||| Sbjct 1669 CAGCTGGATCAGCCTCACCTCAAG 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95025751715824