Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11176 140 3e-28 seq4840 105 6e-18 seq18158 95.1 1e-14 >seq11176 Length=1573 Score = 140 bits (154), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || |||||||| || || | Sbjct 497 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 556 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||| |||||||| ||||| || || || ||||| Sbjct 557 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 616 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || || |||||||||| || || ||||||||||| ||| ||| |||| |||||| Sbjct 617 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCG---CACATTGTCCGATTAT 673 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||||||||| || ||| |||| Sbjct 674 AATATTCAGAAGGAATCGACGCTGCACCTGGT 705 >seq4840 Length=3826 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | ||||| |||| |||||||| |||||||| || || ||| || Sbjct 2556 ACCATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 2497 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | |||||| || || || ||||||||||| |||||||| ||| Sbjct 2496 TCAGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGAT 2437 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || ||||| ||||| || Sbjct 2436 CAGCAGCGGTTGATTTTTGCAGG 2414 >seq18158 Length=729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || ||||||||||| || || | ||||| ||||| | Sbjct 500 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTAGAAGTGGAAGCATCT 441 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| ||||| ||||| ||||| || ||||| || || || || Sbjct 440 GACACCATCGAGAATGTTAAGGCAAAA-ATCCAGGACAAGGAGGGAATTCCACCAGACCA 382 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 381 GCAGCGATTGATCTTCGCGGG 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449762838797640