Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_022750.1 Length=33628 Score E Sequences producing significant alignments: (Bits) Value seq9234 196 1e-45 seq15326 104 5e-18 >seq9234 Length=2011 Score = 196 bits (216), Expect = 1e-45 Identities = 651/999 (65%), Gaps = 38/999 (4%) Strand=Plus/Plus Query 1539 ACGAGCTGGAACACACCGACACCGAGGCCGGTGGCATCAATCCCGATGTATTCGACGTTG 1598 |||| ||||||||| || |||| |||||||| || || ||||| | |||||||| Sbjct 431 ACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTG 490 Query 1599 TATTTTTCGGTGAGTTTGCGGATGGATTCTGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 1658 |||| | ||||| ||||||| || ||||| | | |||||| ||| || || Sbjct 491 TATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAAC 550 Query 1659 TGGTGACGTTCAAGGATCCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCACG 1718 || | || | ||||| | ||| ||||| || | ||| |||||| || | |||||| Sbjct 551 TGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACC 610 Query 1719 CATCCGGCGCTGTCGCCACGGTGTGACGGGTCGTAACCAATCCATACCGG-------GCG 1771 | | ||| ||||| || ||| |||||||| || | ||| ||||| ||| Sbjct 611 AGTGCAGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGCG 670 Query 1772 G-GAGCCGAACGGATTTGCGGCAA-ACGGCGCATAGTCTTCCCATTCTTCCAGCGTGTCG 1829 | |||||| | ||||| ||| ||| ||| ||| ||||| ||||| Sbjct 671 TAGGGCCGAATCCAAA-GCGGCTTGACGTCGC-------TCCACATCTCCCAGC-TGTCG 721 Query 1830 ACCATACAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAACAAATTCA 1889 | ||| || |||| || | | | || ||||| |||| ||||||| | || | Sbjct 722 ATCATGCAAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGG 781 Query 1890 CACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTCA---ATG 1946 |||||||||||||| || |||||| ||||| ||| | | || |||| || Sbjct 782 CACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCC---TCGCGCAGCTCGGCGATA 838 Query 1947 TCGAACAGCGTGCAGCCGCCTTTC-AGGGCGTCCTCAATGGTGACAATCTGCCGCCACTG 2005 |||||||| | |||| | | | | |||||| || | ||||| || | ||||| | Sbjct 839 TCGAACAGATCGAAGCC-CATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTT 897 Query 2006 GCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCCACGCG 2065 || || | || | || ||| || || || ||| |||||| ||| | Sbjct 898 GCGATCGAGGCCCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTG 957 Query 2066 TTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGT--TCACCCGACCAGAACGGGTAGGCG 2123 || | ||||| ||| ||| | || || || | ||||||| | |||| Sbjct 958 GTCCTTTT---TCGCGCGGCCCTTGTTC--CGGTCGTCGCCGGTCCAGAACCCGAAGGCC 1012 Query 2124 TCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGATCGCAGGTGACTCTGTGAGGCC 2183 ||||||| || || || || || |||||||||||| ||| ||| | || || ||| Sbjct 1013 TCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCC 1072 Query 2184 ATACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGGATCCAGAAAATCTCATCGAC 2242 || | |||| ||| | | |||||| | |||| ||| |||| ||||||| Sbjct 1073 ATCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAA 1131 Query 2243 GTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTTT 2302 ||| | |||||||| || |||||| || || ||| ||||||||| || || ||||| | Sbjct 1132 GTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTC 1191 Query 2303 TGCACCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGCCGGGC 2362 || ||||| | ||| || || || ||||||| ||||| ||| || Sbjct 1192 GGCGCCGTTC---CACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCGC 1248 Query 2363 AAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAAT 2422 ||| ||| |||||| ||||||| | ||||||| || ||||||| |||| Sbjct 1249 GAAGTCGACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAG 1308 Query 2423 CTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCGC 2482 || ||| | || |||| ||| |||||||||||||| ||||| ||| | ||||| Sbjct 1309 CTTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGC 1368 Query 2483 GCCAATCTGGCGGGATTTCAGAATATCGCGGATGCGGTG 2521 || ||||| || | |||||| || |||| | ||| || Sbjct 1369 ACCGATCTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTG 1407 >seq15326 Length=957 Score = 104 bits (114), Expect = 5e-18 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 3415 GCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGC-A 3473 || || | |||| | ||| | || ||||| || || |||||||| |||||| |||| | Sbjct 137 GCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAA-GCGCCA 195 Query 3474 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAATACCGGCAAATGTTATCT 3533 |||| |||| | ||| | ||| | | |||||| || ||| | |||| ||| ||||| Sbjct 196 GAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCT 255 Query 3534 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCACGGAA 3579 | | || |||||||||||||| |||| || ||||||||||| ||| Sbjct 256 GATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107457413147540