Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_023588.1 Length=33525 Score E Sequences producing significant alignments: (Bits) Value seq9234 358 1e-94 seq17740 167 5e-37 seq15326 158 3e-34 >seq9234 Length=2011 Score = 358 bits (396), Expect = 1e-94 Identities = 836/1245 (67%), Gaps = 27/1245 (2%) Strand=Plus/Plus Query 2883 TCGTTCTGCAGCGCGTGCATGAGTGCCCAGGGCCAAG-TCAGCATGGCCCGGTGGTGCGC 2941 ||||| | ||||||||||| |||||| | |||| || || || |||| | || Sbjct 173 TCGTTGTCGAGCGCGTGCATCGTTGCCCACG--CAAGATCCGCGTGTCCCGTGACTTCG- 229 Query 2942 GAGCGTCCGGGCGGTGTAGGTCACCTGGCGCCCGCTCGGGGTGATGGTTTTCTGGATCGC 3001 ||||| || | | |||||||| | || ||||| | ||||| || ||| || Sbjct 230 GAGCGGCCCGA-GTCGTAGGTCATGTTTCGGCCGCTGGCGGTGAGCACGCGCTTGATGGC 288 Query 3002 CAGCAGTGACTGCGTGAGGTCGGTCCAGCCGGCGTCGTACTCCAGCCGTTCGTCATTGAT 3061 || | | | | || ||||||||| || || ||| ||||||| || | | | ||| Sbjct 289 CATGAAGGCCGCGGCGATGTCGGTCCATCCAGCATCGAACTCCAGTCGCCCCTTGTGGAT 348 Query 3062 TACGTCGTAGGCTTTCAGCACCAGCCGCGTTTTCACCTCGGGCGAGTAGTTGAAGACGGT 3121 || | | || ||||||||||| ||| ||||||||| ||| | | || | | Sbjct 349 GACCTGTTGCGCCTTCAGCACCAGGCGCTGCTTCACCTCGATGCTGTACTGGTAGCCCTT 408 Query 3122 CACGCCGGGGAAGAACTGGCGCACCAGCTGTGCAACGCCGGTGCCCATGCCGGTCGCATC 3181 ||| ||| ||||||| || | ||| ||||| | |||| ||||||| || Sbjct 409 CACCTGGGGAAAGAACTTCTCGACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTC 468 Query 3182 CACGCCGATGTAGGTCACCCAATAGCGCTTGGTGATCTGCTCGATGAACGCGGCCTGGTC 3241 | |||||| | || || ||| ||||||| | |||| | ||||||| | Sbjct 469 GATGCCGATATGCACGACGTTGTATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGC 528 Query 3242 CTTGAACTCCATGCCCTTGAACTGATGGCGTTCCAGCACGCGGAACTTGCCGCAGGGCAC 3301 || ||| ||| |||||||||||| | ||| | || | |||||||||||||| ||||| Sbjct 529 CTCGAAGTCCGAGCCCTTGAACTGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCAC 588 Query 3302 CAGCGGCGGGGCTACCACCACGATGCCCGCGCTGTCGCCGGTCTCGGCCGGGTCGTAGCC 3361 ||||||| || |||||||| | | ||| ||||| | || | ||||||||||| Sbjct 589 GCGCGGCGGCGCGACCACCACCAGTGCAGCGGCATCGCCCTTGTCTGATGGGTCGTAGCC 648 Query 3362 GATCCACACAGCGCGGTCGCCGTAGGGCCGGACGGCAAACGGCTTGTAGTCGTCCGCCCA 3421 || |||||| | || |||||||||| | || ||||||| |||| | | Sbjct 649 GACCCACACCGGAAAGTGAGCGTAGGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACAT 708 Query 3422 CTCGACCCAGCTATCGACCTGACAGGGCTGCAGCATCGTGAGCGGGAATACGCTGGC--G 3479 ||| |||||| |||| | || | ||||| | || |||| ||| | || | | | Sbjct 709 CTC---CCAGCTGTCGATCATGCAAGCCTGCATCTGCGCCAGCGTGAACA-GC-GACAAG 763 Query 3480 CTGTCATCCACGAACTCGCACATCAGCAGATTGGCGAATTCCTCGGCGCTGTAGTCGCGG 3539 ||||| || | ||||| |||||| | ||| || ||||| || ||| |||||| || | Sbjct 764 CTGTCGTCGATGAACTGGCACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCG 823 Query 3540 CGCAGTTCCTCGATATCGAACAGGTCACAGCCACGGCCGGCCGCATCAAGAACGGTCACG 3599 ||||| || ||||||||||||| || |||| || | || || || || ||| Sbjct 824 CGCAGCTCGGCGATATCGAACAGATCGAAGCCCATCGCGACGGCGTCTTCCACCGTGACG 883 Query 3600 ATCTGGCGCCA-----GATCGCGTCCTCGCAACGCCGGCCACCCATCAGGCGCGCGTGGC 3654 || | |||||| ||||| | || ||| |||| || | || || | ||||| Sbjct 884 ATGTCGCGCCATTTGCGATCGAGGCCCAGCAT-GCCG-CCGCGCAGCAT---CTTGTGGC 938 Query 3655 TCACATCCAGCTGGATCTGCTGGGACACCGAGCGTCCCTTGTTGAAGCGCTCGCCGGTCC 3714 | || | ||| || | || ||| |||||||| | |||||||||| Sbjct 939 TGGTGTCGATGCGGACGTGGTCCTTTTTCGCGCGGCCCTTGTTCCGGTCGTCGCCGGTCC 998 Query 3715 AGAAGTCGAAGGCTTCATGCGCCATGGTGGACGGCGTGCTGAAGTAGGTCTTGCGCCACT 3774 |||| ||||||| || |||| ||| | || ||||| ||| |||||||||||||| | Sbjct 999 AGAACCCGAAGGCCTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGT 1058 Query 3775 TCTTGTGCATCGCCATGCCGCTGGCGACCTTGTTCAGCTGGTTGAAACCGTAGG-TCCAG 3833 ||||||| ||||| | ||||| | |||||| | ||| || || ||| || ||| Sbjct 1059 GCTTGTGCGAAGCCATCGCACTGGCCAGCTTGTTGATCTGCCTG-AAGCGTGGGACCCAA 1117 Query 3834 AAGAACTCGTCAAAGTAGAAATTGCCGTGGTAGCCCTGTGCGGTGCGGGCGTTGGTGCCC 3893 || || || || |||||||| | |||||| |||| ||| || || |||||||||||| Sbjct 1118 AAAAATTCATCGAAGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCA 1177 Query 3894 AGGAAGAACAGCTCGGCGCCATTGGCCAGGGTGATCGGGTCGCCGGTCAGGTCACGGTCC 3953 ||||||| |||||||||||| || ||| |||| ||||| ||||||| ||| Sbjct 1178 AGGAAGATCAGCTCGGCGCCGTTCCACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTC- 1236 Query 3954 AGCACCTCACGCACGAAGCCCCGCATATAGCCGAGGAAGATGTGCGCTTGGCTCTTGGAT 4013 ||||| | ||||| | || |||| | |||| ||| || || ||| || Sbjct 1237 --GACCTCTTTCGCGAAGTCGACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGAC 1294 Query 4014 GCGCTCAGGAAAATCTGGTTGCGGCCGGTGGTCAGCGCGTCGATCAGCGCCTCGCGGGCG 4073 || || ||||| || |||||| || || || || |||||||||||| | Sbjct 1295 GCCGACAAGAAAAGCTTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAA 1354 Query 4074 AAGTAGTAGGTGGCACCGATCTGGCGCGACTTCAGGATGATGCGC 4118 ||||| ||||| ||||||||||| |||| ||||||||| |||| Sbjct 1355 AAGTAATAGGTCGCACCGATCTGCCGCGCTTTCAGGATGGCGCGC 1399 >seq17740 Length=755 Score = 167 bits (184), Expect = 5e-37 Identities = 261/368 (71%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 2035 TCACGCTCTTGATGCCGGTGAATTCATCCCTTGCCGCCACCTCACTGACCGGGATCACCT 2094 ||||| | |||||| | | ||| || ||| | ||||| ||||| |||||| |||| || Sbjct 740 TCACGTTTTTGATGGCCGCGAAGTCGTCCTTGGCCGCGACCTCGGAGACCGGAATCAGCT 681 Query 2095 GCAGGCCGTCCTTCTTCCCGTTGGGCGAGTGAACGAACAGGTTCTTGAAATTGCCCGGCC 2154 ||||| || ||| ||| || | ||| | ||||||||| ||| |||||||| | Sbjct 680 TTAGGCCCTCGGCCTTGCCGCCCGGGGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGGTC 621 Query 2155 CGCGCGACTGCCGCAGTGCGTCGCGTAACGCATCCACGTCCATGCCCTCGGGT--TGGGG 2212 | | | | ||| || ||||||| |||||| |||| ||| | | |||| Sbjct 620 CCTTGGCCCCCTTCAGCGCCTCGCGTAGTGCATCCGCGTCG--GCCGTGCTGACCTGGGC 563 Query 2213 ATCGGTCATGTAGAGGATGTAGCCGGCGTGCGAACCGTTGTTGTAATACTTCCGGCGGAA 2272 || | || |||||||||| ||||||||||||| |||||| ||| |||||||| ||||| Sbjct 562 GTCCGACAGGTAGAGGATGAAGCCGGCGTGCGACCCGTTGGCGTAGTACTTCCGCCGGAA 503 Query 2273 AAGCGTGGCCGACTCATTCAGCAACGCGGCCTGTA-CG-GCTGGCATCCATTCCGGCAGG 2330 | ||||| | ||| || ||| | || | ||| | || |||| || | || |||| Sbjct 502 CATGGTGGCTGCCTCGTTGAGCCAGGCCGACTGCAGCGCGCTG--ATGTACTCGGGCAAA 445 Query 2331 CCGTAGATTTCCTGATCCGCGTCCGCCTCGCGCAGCTGGAACACCTCACCAGCGGGAAAC 2390 |||||||| || |||| |||| ||||||| || ||||||| | || || |||||| Sbjct 444 CCGTAGATCTCTTGATTGACGTCATCCTCGCGAAGGTGGAACAGCGAGCCGGCTGGAAAC 385 Query 2391 TCATGCTC 2398 || ||||| Sbjct 384 TCGTGCTC 377 >seq15326 Length=957 Score = 158 bits (174), Expect = 3e-34 Identities = 228/316 (72%), Gaps = 7/316 (2%) Strand=Plus/Plus Query 4894 TGGAACACTTCCGCAGCACGCTGCCGGA-CAGCCCGTTCCGCGCCTATGGCGACGTGCTG 4952 |||| ||| ||||| || | ||| || |||| ||| |||| ||||||||||||||| Sbjct 33 TGGAGCACATCCGCGGCTA-CAGCCCGAGCAGCGAATTCGGCGCGTATGGCGACGTGCTG 91 Query 4953 GCGGTGAAGGCCGAGGAAGTCGAAATTGCCGGCAAGAAGAAGCTGGCGCTCTTCGCCCAG 5012 ||||| ||| |||| || ||||| || | |||| |||||||| || |||| || ||| Sbjct 92 GCGGTCAAGACCGAAGAGGTCGAGATCGGCGGCGCCAAGAAGCTCGCCCTCTATGCGCAG 151 Query 5013 GTCGAGCCGACCGACGACCTGGTCGACATGGTCAACGTGCGCAAGCAGAAGGTCTTTACC 5072 || || |||||||| ||| ||| || ||| |||| |||||| ||| | | Sbjct 152 ATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAAGCGC---CAGAAGATCTACAGC 208 Query 5073 AGCATCGAGATTTCCCCGGAGTTCGCCGACAGCGGCAAGGCGTACCTGTTCGGCCTGGCC 5132 |||| | ||| |||||||||||| || |||||| || ||| ||||||||||| Sbjct 209 TCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCTGATCGGCCTGGCC 268 Query 5133 GTGACCGACTCCCCCGCCAGCCTGGGCACCAGCATGCTCGCGTTCTCGGCCCAGCACCCG 5192 || |||||| ||| |||||||| ||||| ||||| |||| ||| |||||| | Sbjct 269 GTCACCGACAACCCTGCCAGCCTCGGCACTGAAATGCTGCAGTTCGCGG-CCAGCAATCC 327 Query 5193 GAGAG-CAGCCCGCTC 5207 || || || |||| || Sbjct 328 GAAAGCCAACCCGTTC 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107127906938722