Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq19325 136 3e-26 seq20998 109 4e-18 seq15663 107 1e-17 seq15823 104 2e-16 seq2104 86.0 5e-11 >seq19325 Length=667 Score = 136 bits (150), Expect = 3e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| |||||| || |||||||| || ||||| | | |||| Sbjct 148 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 89 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | ||||||||||||||||| ||||||||| ||||| ||| Sbjct 88 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTAT 29 Query 282452 GCAGGAACAGTAATAACGGCATC 282474 || || || |||||||| ||||| Sbjct 28 GCGGGGACTGTAATAACAGCATC 6 >seq20998 Length=594 Score = 109 bits (120), Expect = 4e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 |||| ||||||| ||||| | |||| |||||| |||||||||||| ||||| ||| || Sbjct 221 AAAACAGTATTGTGCGGATTCATTGCAACTTGATTTTTGGCTGCATCGCCAATAAGACGT 162 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || || ||||||| |||||| ||||| ||||| ||||||||| Sbjct 161 TCAGTATCGGTAAATGCAACATACGATGGTGTTGTACGATTACCT 117 >seq15663 Length=922 Score = 107 bits (118), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||||| ||| |||||| ||| ||| || || || | |||| ||||| | Sbjct 92 AAAGGCCAATGTTTGATATCTTGTTGTACAGTTGAATCCTTGTACTCTCGGCCAATCAGA 151 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||| ||||||||| |||||| ||||| || |||| |||||||||||| Sbjct 152 CGTTTAACATCAAAAACAGTATTTTCCGGATTTGTTGTTAACTGATTTTTGGCTGCATCA 211 Query 282740 CCAATCAGATGTT-----CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| ||| | | || || | || |||| || |||||||| || | |||||| Sbjct 212 CCAATAAGACGCTCACCGCTTTCACCAGTGAATGCTACGTATGATGGCGTGATCCGATTA 271 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || || ||||| ||||||||||| ||| ||||||| | || || ||||| || Sbjct 272 CCCTGTTCATTTGCAATAATTTCCACTCGTCCATTTTTATAGACTCCAACACAGCT 327 >seq15823 Length=906 Score = 104 bits (114), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 218 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 159 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 |||| ||| |||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct 158 TTGTTTGCCTGTGGATTTATCCTGGGCAGAAACATTCAGAATACCGTTGGCGTCAATATC 99 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 98 AAACGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 39 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | | || || ||||| |||||||| || Sbjct 38 TTTACCAAGCAAGTTATTGTCTTTAGTCAA 9 >seq2104 Length=6899 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234 |||||||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 4418 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 4359 Query 917235 TCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGGTACACCAAA 917291 || | ||||| |||| ||||| || || ||||||||||||||| ||| || Sbjct 4358 ACCACAGATTTTCGAACTCATTGCTGAACACTCGATATGCCAACCAGGTCTACCTAA 4302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739453917967638