Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4840 95.1 8e-15 seq11176 91.5 1e-13 >seq4840 Length=3826 Score = 95.1 bits (104), Expect = 8e-15 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| |||||||||||| | || | ||||||||||| |||||| | Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 2474 TTTA-CATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 2532 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 ||||| ||||| || ||||| || Sbjct 2533 AGTTTTGACAAAAATTTGCATGGT 2556 >seq11176 Length=1573 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || || |||||||| | |||||| |||| |||| || || || ||||| Sbjct 687 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 628 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||| ||||| ||| || || || |||| Sbjct 627 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT-TGCTTTGACATT 569 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||||| || | || || |||||||| || || || ||||| Sbjct 568 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 509 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 508 AAAAATCTGCAT 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328608002304960