Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11176 149 6e-31 seq4840 131 2e-25 seq18158 82.4 8e-11 >seq11176 Length=1573 Score = 149 bits (164), Expect = 6e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| ||||| |||||||| ||||| || || ||| | ||| || ||| || Sbjct 705 ACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCC 646 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| |||| ||||||||||| || || |||||||| || |||||| Sbjct 645 AGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGA 586 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| |||||| || | || || || | ||||| ||||| || ||||||||| Sbjct 585 ATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTA 526 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| || || ||||| |||||| Sbjct 525 CCCGTCAAAGTCTTTACAAAAATCTGCATT 496 >seq4840 Length=3826 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 |||||||||||||| ||||||||||| || |||||||||||||| || || ||||| | Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || ||||| || || || ||||| |||||||| |||||| Sbjct 2474 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2533 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||||||||| Sbjct 2534 GTTTTGACAAAAATTTGCAT 2553 >seq18158 Length=729 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || ||||| |||||||| || || || || || || || || || |||||| Sbjct 361 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 420 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||| || | |||||| || | || || ||||||||||| | | Sbjct 421 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCTAATGTGATTGTTTTACCGGTAAGA 480 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||| || |||||||| Sbjct 481 GTTTTAACAAAGATTTGCAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505247014226760