Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq11176 163 9e-35 seq3828 150 5e-31 seq18158 120 9e-22 seq4840 118 3e-21 seq15663 109 2e-18 seq19325 93.3 1e-13 seq12274 93.3 1e-13 seq20998 86.0 2e-11 >seq11176 Length=1573 Score = 163 bits (180), Expect = 9e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || || || || || || || |||||||||||||| || Sbjct 723 CCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGAC 664 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 ||||| || || || || || || || || |||||||| || || |||||||| || ||| Sbjct 663 AATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 604 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || ||||| || ||||| ||||| || || | |||||| | || ||| Sbjct 603 ATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACT 544 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | || || || || | || |||||||||||||||||| Sbjct 543 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 496 >seq3828 Length=4596 Score = 150 bits (166), Expect = 5e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 130740 CCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGCAATATCCCCGGGAGAT 130799 ||||||| ||| ||||||||||||||||| |||||||||||||||| ||| || ||| | Sbjct 115 CCTCCAATCATCACAAAATCAGCTCCTGCACCAAATGCTTTCGCAACATCTCCAGGATTT 174 Query 130800 TTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGCCGCATCAGCACACTCT 130859 | || || ||||| | ||||| || || || |||||||| ||||||||||| || Sbjct 175 GTGCATCCTCCATCGCTCACCACATGCCCGTTCAAACCATGTGCAGCATCAGCACATTCC 234 Query 130860 GAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCTTGTAGTACAAACAGCA 130919 ||| ||| | ||||||||| |||||||||||| || | ||| |||||||| | | Sbjct 235 AAAACAGCGCTCAATTGTGGATAGCCAACTCCAGTTTTCTTACGTGTCGTACAAACTGAA 294 Query 130920 CCTGGACC 130927 || ||||| Sbjct 295 CCAGGACC 302 >seq18158 Length=729 Score = 120 bits (132), Expect = 9e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || || || |||||||| ||||| || |||||||| |||||||| Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 68 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || |||||||| || || | ||||| | |||||||| | || | ||||| || Sbjct 69 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 128 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||||||||||||||| ||||| Sbjct 129 GTCAATGTTTTTACAAAAATTTGCAT 154 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | || ||||||||||| |||||||| ||||| ||||||| Sbjct 148 TTTGCATGCCACCTCGGAGGCGAAGTACAAGATGAAGTGTAGACTCCTTTTGGATATTAT 207 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 |||| || || || || |||||||| | |||||| || ||||| Sbjct 208 AATCGGACAAGGTACGACCATCTTCCAATTGTTTACCTGCAAA 250 >seq4840 Length=3826 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | || |||||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 2414 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 2473 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || ||||| |||| || || || |||| Sbjct 2474 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 2533 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||| ||||| Sbjct 2534 GTTTTGACAAAAATTTGCAT 2553 >seq15663 Length=922 Score = 109 bits (120), Expect = 2e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 ||||||| || | |||||| || || ||||| ||||||||||| || ||||| | Sbjct 324 TGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGG 265 Query 349292 ACAACGCCATCATACGTTGCATTTAC---CGAAA---CTGAGCGTATGATTGGTGATTCT 349345 | |||||||||||||| ||||| || |||| ||||||| | ||||||||| | Sbjct 264 ATCACGCCATCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCA 205 Query 349346 GCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATT 349405 || |||||||| | | ||||| ||||||| |||||||||| ||| || || ||| Sbjct 204 GCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATT 145 Query 349406 GG 349407 || Sbjct 144 GG 143 >seq19325 Length=667 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| |||||| | ||||||||||| ||||||||||| | ||||| |||| || | Sbjct 246 TTCTTATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATG 305 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 | ||||| ||||| || | || ||||| ||||| ||||| || || Sbjct 306 GTATTTTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGG 351 Score = 89.7 bits (98), Expect = 2e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 183692 ACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATT 183751 ||| || | ||| ||||| ||||| |||| || ||||| || || || || ||||| | Sbjct 352 ACCTCCGAGATGAGTATCCCCAGCTGTAGACTTGACTTCGAAAATACCATCCTCAATGGT 293 Query 183752 TAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||| ||||||||||||||||||||||| | |||||| Sbjct 292 TAGAATAGATACATCAAATGTACCACCACCAAGATCAAA 254 Score = 84.2 bits (92), Expect = 7e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||||||||||||| || || || || ||||||||| | || || || || |||||| Sbjct 6 GATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGAT 65 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 | || ||||| || ||||||||||| | || || || ||||| || || || || Sbjct 66 TCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCT 125 Query 349727 ATTGCATATGG 349737 ||||| ||||| Sbjct 126 ATTGCTTATGG 136 >seq12274 Length=1369 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||||||||||||||| ||||| ||||| ||| |||||| ||||| || | || Sbjct 429 TCAAAATCTTCACCACCCAAATGAGTATCACCATTAGTAGCCAATACTTCGAAAACACCA 370 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | |||||| | || || || |||||||||||||||||||| | ||| ||| Sbjct 369 TTATCAATAGTCAACATCGACACATCAAATGTACCACCACCAAGATCGAAA 319 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||||||||| |||| ||| | ||||||||||| |||||||| || | | || |||| Sbjct 308 AATATTCTTGTTTTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACTATTGAT 367 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 | || |||| ||||| || ||| ||||||||| ||| | ||||| ||||||||| Sbjct 368 AATGGTGTTTTCGAAGTATTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTT 427 Query 349886 GA 349887 || Sbjct 428 GA 429 >seq20998 Length=594 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341 |||||| | ||||| ||||| || |||||||||||||| ||||| ||| | ||||| || Sbjct 117 AGGTAATCGTACAACACCATCGTATGTTGCATTTACCGATACTGAACGTCTTATTGGCGA 176 Query 349342 TTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTT 349386 | | || |||||||||| ||| ||||| | ||||| ||||| Sbjct 177 TGCAGCCAAAAATCAAGTTGCAATGAATCCGCACAATACTGTTTT 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514789177597289