Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq19355 199 1e-46 seq18505 80.6 7e-11 >seq19355 Length=665 Score = 199 bits (220), Expect = 1e-46 Identities = 416/610 (68%), Gaps = 11/610 (2%) Strand=Plus/Minus Query 2383 CATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACCC 2442 ||||||| |||||||| | || || | || | |||||||| | | || | | Sbjct 651 CATGTCAGACCCCCGCCACGTCGAGGGAGATCGGCTGGTACTGGCCCCG---CGCGTCGC 595 Query 2443 GCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCCT 2502 |||| | || ||||| || | |||| ||| ||| ||| || || |||| |||||||| Sbjct 594 GCTCGTAGAACCGCACATAGGTCTTGCTGCCCACCACCGTCACCGCGTCGCTGATGGCCT 535 Query 2503 GCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTGC 2562 ||| || ||||||| || ||||||| || ||||| |||| | ||||| || Sbjct 534 TCATCGCCTGCTGCCAGCGCGGATCATCGAACTTGAGGCGATGCAGCGAGAGCACCTCGC 475 Query 2563 CGGTACGGATGTTCCCTGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACCT 2622 |||| |||| | || | ||| |||| ||| || |||| || ||| | | Sbjct 474 CGGTCTTGATGCTGCCGTCCTGGCCCACCTTGAAGGCGCTATTGACCAAGGTGCGCAGTT 415 Query 2623 CCGCGCGAGCGCCTTCTGTCCATTCGTGGAGGCACTCGTCGATCAACGCCTTGGCCGCCT 2682 | || || | |||||| ||||| |||| |||||||| ||||| | ||||||||||||| Sbjct 414 CGGCTCGGGAGCCTTCGGTCCAGTCGTTCAGGCACTCATCGATGAGGGCCTTGGCCGCCT 355 Query 2683 GCAGGCGCTCGTCGAAGGCGATGTTGT-CGGCCATGGCCCGAATGACCTTGTAGCGACCG 2741 |||||||||||||||| ||| ||| | | || ||| || | || ||||||||| ||| Sbjct 354 GCAGGCGCTCGTCGAATTGGATACTGTCCTGGCA-GGCGCGCAGGATCTTGTAGCGGCCG 296 Query 2742 TCGAAGCTGACCAGGGAGGCGTTGCCCTTCTTGCCACCTACCTTCGCCTGGTACTGCTCG 2801 ||| || || |||| |||||||||| | ||| || | || || |||||||||| Sbjct 295 TCGTAGGTGTACAGGCTCACGTTGCCCTTGTCGCCGCCGATTTTGGCGCCGTACTGCTCG 236 Query 2802 GCCGACAGTG-TG-ATGAAGGCTTCGATATCGCCGAATGTCGCCAGTTTGAAATCCAGCA 2859 | || | | || | ||||||| | || || |||| || || ||||| ||| Sbjct 235 --CCACTGAGCTGCACGAAGGCTGCAATGTCAGCGAACGTGTCCGCCTTGAAGGTGCGCA 178 Query 2860 ACGCCTTGTTCAG-AGCCTTCCCCTTGGCAACGATCTCCTGCACAAGGCGGTCGCGCTCC 2918 | | | ||| || | | | | | |||||||||| || |||||||| || Sbjct 177 GTTCTTCGCGCAGCTGCAGGGCGCGCTGGATC-TTCTCCTGCACCAGCTGGTCGCGCGCC 119 Query 2919 AGGTCGATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTAC 2978 || ||||| ||||||||| | | || || ||||| || || || |||| |||||| Sbjct 118 AGATCGATCGGCTTGATCTGTGCCTCGGGCACCAGCCGACCGTTACGGTCCTCGCGGTAG 59 Query 2979 CCGGCGGGAA 2988 ||| |||||| Sbjct 58 CCGTCGGGAA 49 >seq18505 Length=709 Score = 80.6 bits (88), Expect = 7e-11 Identities = 145/207 (70%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 22016 GTTCGCCGAAGGCCTGGTCAATGCCGGCCGACTGCTGCCGCGCCAGAAGGCTCCGGTGAT 22075 |||||||||||||||||| || | ||| ||||||| || ||| || | | ||| | Sbjct 252 GTTCGCCGAAGGCCTGGTGAAGGAAGGCAAGGTGCTGCCCCGTCAGCAGCCGGCTGTGGT 311 Query 22076 CGAGTTGCTGGTGAGTCTGCCTGCCGACACC---CCCCTGGAGTTCGCCGAGGGCG--AC 22130 ||| ||||| || | ||| | | || || || | ||||||||||||| || Sbjct 312 TGAGCTGCTGTTGGCCCAGCCGGATGGCAAGGAGCCGCTCAACTTCGCCGAGGGCGAAAC 371 Query 22131 GGCCAGGTCACCAAGCCGGCGGCCGAGGTGCTGCGC-AGCTTGCTGGCCGAACTGCCCAA 22189 | | ||| |||||||||||| |||||| ||| ||| ||||| | |||||||| Sbjct 372 GAC--GGTGTCCAAGCCGGCGGAGTCGGTGCTTCGCGAGC-TGCTGATCAGCCTGCCCAA 428 Query 22190 GCAGGTGGACTTTTCCGAGAAATCCGG 22216 | ||||||||| ||||| ||||| Sbjct 429 GGCGGTGGACTTCAGTGAGAAGTCCGG 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126539981454330