Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq9234 203 7e-48 seq15326 107 4e-19 >seq9234 Length=2011 Score = 203 bits (224), Expect = 7e-48 Identities = 826/1282 (64%), Gaps = 51/1282 (4%) Strand=Plus/Minus Query 19566 GGCTGACCCAGCTCATCATCAAACCGCAGAAAACCGGCGGTGACTTCAAGGAAATTGACC 19625 |||||| |||||| ||| | || || |||| |||||||| |||| |||||| ||||||| Sbjct 1682 GGCTGATCCAGCTGATCCTGAAGACGGAGAAGACCGGCGGCGACTACAAGGAGATTGACC 1623 Query 19626 TGCTGGGACGTCAGATTGAACGACTGGCACGGGTCAACCGCTACAGTCAGACCGGCAACG 19685 | ||||| || ||| | || || ||| || ||| | ||| |||||||| || Sbjct 1622 TTCTGGGGCGGCAGCTGGAGCGCACGGCGCGCGTCGAGAAGTACCAGCAGACCGGGCGCG 1563 Query 19686 AGGCAGACCTTAATCCGAACGTCGCTAACCGCAACAAAG-GCGGGCGTCGCAAACCGAA- 19743 | | ||| | ||||||||| |||| ||||| | || | | ||||| || || Sbjct 1562 AAGGGGACTTGAATCCGAACATCGCGGCGCGCAATGCCGCGCCGAAG-CGCAAGCCCAAG 1504 Query 19744 ---AAAGAATTTTTTCAGTGACGAGGCCATCGAAAAGCTGGAGCAGATTTTCTTTGAGCA 19800 || ||| | ||| | ||| |||| |||||| | | ||| Sbjct 1503 CGCAACGAACT----CAGCGCCGACCAGATCGCGCTGCTGGAAACCAAGCTGCGCGAGTC 1448 Query 19801 GTCTTTCGAATATCAGTTGCACTGGTATCGCGCCGGGCTTGAGCACCGCATCCGCGATAT 19860 | ||| | || | |||||| ||| | | | | || ||| | |||| || Sbjct 1447 GAACTTCCCTTTCCATCAGAACTGGT-TCGATCAGCAGT--ACCAGCGCCTGCGCGCCAT 1391 Query 19861 CCTGAAATCCCGCCAGATTGGCGCGACGTTTTATTTTTCCCGCGAGGCGCTGCTGCGCGC 19920 ||||||| | || ||||| || ||||| | ||| ||||| |||||||||||||| || Sbjct 1390 CCTGAAAGCGCGGCAGATCGGTGCGACCTATTACTTTTCGCGCGAGGCGCTGCTCTCGGC 1331 Query 19921 CCTGAAAACCGGTCATAACCAGATTTTTCTGTCGGCCAGTAAAACGCAGGCGTATGTGTT 19980 | |||| || | ||| || |||| ||||||| || ||||||| | ||| Sbjct 1330 CGCGAAAGAGGGGCGCAACAAGCTTTTCTTGTCGGCGTCGAAGGCGCAGGCCCACCAGTT 1271 Query 19981 CCGCGAATACATCATCGCCTTTGCCCGGCTGGTTGACGTTGACCTGACCGGTGACCCGAT 20040 |||| |||||| ||| ||| || ||| ||||| ||||||| || || || Sbjct 1270 CCGCAGCTACATCGTCGACTTCGCGAAAGAGGTCGACGTCGACCTGAAGGGCGAGAACAT 1211 Query 20041 TGTCCTGGGCAATAACGGCGCAAAACTGATTTTTCTCGGCACCAACTCCAACACCGCACA 20100 ||| | |||||||| | ||||| || || ||||||||| ||| || || || Sbjct 1210 CAAGCTGTG---GAACGGCGCCGAGCTGATCTTCCTTGGCACCAACGCCATGACGGCCCA 1154 Query 20101 GAGCCATAACGGCGACCTGTACGTCGACGAGATTTTCTGGATCCCGAATTTTCAGGTA-C 20159 |||| || |||||||| | ||| |||| || |||| ||| |||| | |||||| | Sbjct 1153 GAGCTATCACGGCGACTTCTACTTCGATGAATTTTTTTGGGTCCC-ACGCTTCAGGCAGA 1095 Query 20160 TGCGTAAGGTGGCATCAGGTATGGCCTCACAGAGTCACCTGCGCTCGACCTATTTCTCCA 20219 | ||| |||| | ||||| || || | ||| |||| |||||||||||| | Sbjct 1094 TCAACAAGCTGGCCAGTGCGATGGCTTCGCACAAGCACTGGCGCAAGACCTATTTCTCGA 1035 Query 20220 CCCCGTCCACGCTGGCGCACGACGCCTACCCGTTCTGGTCGGGTGA--ACTGTTCAACCG 20277 | || || || || ||||||| |||| | ||||||| | || || || | ||| Sbjct 1034 CGCCCTCGGCGATGTCGCACGAGGCCTTCGGGTTCTGGACCGGCGACGACCG--GAACAA 977 Query 20278 GGGACGCGCCAGCGCCGCCGAACGCGTGGAAATCGACGTCAGTCATAACGCCCTTGCCGG 20337 ||| ||||| | || | ||| |||||| ||| || || || ||| Sbjct 976 GGGCCGCGCGA---AAAAGGACCACGTCCGCATCGACACCAGCCACAAGATGCTGCGCGG 920 Query 20338 AGGTCTTCTCTGTGCGGACGGCCAGTGGCGGCAGATTGTCACCATTGAGGACGCCCT-GA 20396 || | || | || || | ||||| | || ||||| | || |||||| | | Sbjct 919 CGGCATGCTGGGCCTCGATCGCAAATGGCGCGACATCGTCACGGTGGAAGACGCCGTCGC 860 Query 20397 AAGGCGGCTGCACGCTGTTCGACAT---TGAGCAGCTCAAACGTGAAAACAGCGCCGACG 20453 | | |||| | |||||||| || |||| || | | ||| ||||| ||||| Sbjct 859 GATG-GGCTTCGATCTGTTCGATATCGCCGAGCTGCGCGA---GGAATACAGCCTCGACG 804 Query 20454 ATTTTAAAAACCTGTTCATGTGTGAATTTGTTGACGACAAGGCGTCGGTGTTCCCGTTCG 20513 | || |||||||||||||| | || | ||||||| |||| ||||| || | | Sbjct 803 AGTTCGCGAACCTGTTCATGTGCCAGTTCATCGACGACAGCTTGTCGCTGTTCACGCTGG 744 Query 20514 AGGAGCTGCAACGTTGCATGGTCGACACGCTGGAAGAATGGGAAGACTATGCGCCGT-TT 20572 | || |||| ||||||| |||||| ||||| ||| ||| ||| ||| Sbjct 743 CGCAGATGCAGGCTTGCATGATCGACA-GCTGGGAGATGTGGA-------GCGACGTCAA 692 Query 20573 GCCGCAAATCCGTTCGGCTC-CCGC-------CCGGTATGGATTGGTTACGACCCGTCAC 20624 ||||| | |||||| | ||| ||||| ||| | || |||||||| ||| Sbjct 691 GCCGC-TTTGGATTCGGCCCTACGCTCACTTTCCGGTGTGGGTCGGCTACGACCCATCAG 633 Query 20625 ACCGTGGCGACAGCGCCGGATGCGTGGTACTGGCACCGCCGGTGGTGGCCGGTGGCAAAT 20684 || ||||| ||| | | ||||| | || |||||| ||| | || ||||| | Sbjct 632 ACAAGGGCGATGCCGCTGCACTGGTGGTGGTCGCGCCGCCGCGCGTGCCAGGCGGCAAGT 573 Query 20685 TCAGAATACTTGAGCGTCACCAGTGGAAAGGCATGGACTTTGCCACCCAGGCGGAATCCA 20744 || | || || | || | |||| || ||| |||||| | | ||||| || ||| Sbjct 572 TCCGCATCCTACATCGCGAGCAGTTCAAGGGCTCGGACTTCGAGGCGCAGGCCGAGGCCA 513 Query 20745 TCCGCAAACTCACCGAAAAATATAACGTTGAATACATCGGGATTGATGCCACCGGCCTCG 20804 |||| ||||| | |||| ||||| | | ||||| || || |||||||| | Sbjct 512 TCCGTCGGATCACCCAGCAATACAACGTCGTGCATATCGGCATCGACAAGACCGGCCTGG 453 Query 20805 GTGTCGGCGTGTTCCAGCTCGT 20826 ||| |||||||||||| |||| Sbjct 452 GTGCTGGCGTGTTCCAGATCGT 431 >seq15326 Length=957 Score = 107 bits (118), Expect = 4e-19 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 18786 TTCCGTGCCGAGGCTTGCCGGGTCATCGGTGACGGCCAGCCCCACCAGATAACATTTGCC 18845 ||| ||||||||||| || |||| |||||||||||||| || | |||||| ||| | Sbjct 301 TTCAGTGCCGAGGCTGGCAGGGTTGTCGGTGACGGCCAGGCCGATCAGATAGGCCTTGTC 242 Query 18846 GGTGTTGGCAAAGTTCGGCTGAATTTCCATTGAGGTATAGACCTTCT-GCGCGGCCTTGT 18904 ||||| ||| || |||||| | | ||| | ||| | |||| ||||| |||| ||||| Sbjct 241 GGTGTCGGCGAACTTCGGCCGCACTTCGAGCGAGCTGTAGATCTTCTGGCGC-TTCTTGT 183 Query 18905 TCATCGCGATAAGGTCATCGGTCGGGGTGATTTTCGCAAACAGCGC 18950 | |||||||| || || ||||| || | ||| | |||| | || || Sbjct 182 TGATCGCGATCAGTTCGTCGGTGGGAGAGATCTGCGCATAGAGGGC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104408680943622