Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq9234 205 2e-48 seq15326 104 4e-18 >seq9234 Length=2011 Score = 205 bits (226), Expect = 2e-48 Identities = 832/1285 (65%), Gaps = 57/1285 (4%) Strand=Plus/Plus Query 8668 ACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCCGATGTATTCGACGTTG 8727 |||| |||||||||||| |||| |||||||| || || ||||| | |||||||| Sbjct 431 ACGATCTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTG 490 Query 8728 TATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAAGTCCATGCCTTTCCAC 8787 |||| | ||||| ||||||| || ||||| | | |||||| ||| || || Sbjct 491 TATTGCTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAAC 550 Query 8788 TGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGGTGCCAGCACCAC- 8846 || | || | || || | ||| ||||| || | ||| |||||| || | |||||| Sbjct 551 TGCTCGCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACC 610 Query 8847 ---GCATCCGGCACTGTCGCCACGGTGTGACGGGTCGTAACCAATCCAGACCGGGCGG-G 8902 ||| | |||| ||||| || ||| |||||||| || | ||| ||||| | | Sbjct 611 AGTGCAGC-GGCA---TCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTG 666 Query 8903 AGCCGAACG--GATTCGCGGCAAA-CGGCGCATAGTCTTCCCAT-TCTTCCAGCGTGTCG 8958 ||| | | || || |||| |||| ||| ||| ||| ||||| ||||| Sbjct 667 AGCGTAGGGCCGAATC----CAAAGCGGCTTGACGTCGCTCCACATCTCCCAGC-TGTCG 721 Query 8959 ACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAACAAATTCA 9018 | |||||| |||| || | | | || ||||| |||| ||||||| | || | Sbjct 722 ATCATGCAAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGG 781 Query 9019 CACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTC---GCGTTTAAGCTGCTCAATG 9075 |||||||||||||| || |||||| ||||| ||| ||| |||| | || Sbjct 782 CACATGAACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCGC---AGCTCGGCGATA 838 Query 9076 TCGAACAGCGTGCAGCCACCTTTC-AGGGCGTCCTCAATGGTGACAATCTGCCGCCACTG 9134 |||||||| | |||| | | | | |||||| || | ||||| || | ||||| | Sbjct 839 TCGAACAGATCGAAGCC-CATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTT 897 Query 9135 ACCGTCCGCACAGAGAAGCCCACCG-GCAAGAGCGTTATGACTGACGTCGATTTCCACGC 9193 | || | || | || ||| ||| | | || || ||| |||||| ||| Sbjct 898 GCGATCGAGGCCCAGCATGCCGCCGCGCAGCATC-TTGTGGCTGGTGTCGATGCGGACGT 956 Query 9194 GTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGT--TCACCCGACCAGAACGGGTAGGC 9251 | || | ||||| ||| ||| | || || || | ||||||| | |||| Sbjct 957 GGTCCTTTT---TCGCGCGGCCCTTGTTC--CGGTCGTCGCCGGTCCAGAACCCGAAGGC 1011 Query 9252 GTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGAGGC 9311 ||||||| || || || || || |||||||||||| |||| ||| | || || || Sbjct 1012 CTCGTGCGACATCGCCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGC 1071 Query 9312 CATACCTGATGCCACCTTACGCAG-TACCTGAAAATTCGGTATCCAGAAAATCTCGTCGA 9370 ||| | |||| ||| | | |||||| | || | ||| |||| || |||| Sbjct 1072 CATCGCACTGGCCAGCTTGTTGATCTGCCTGAAGCGTGGG-ACCCAAAAAAATTCATCGA 1130 Query 9371 CGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGTT 9430 ||| | |||||||| || |||||| || || ||| ||||||||| || || ||||| | Sbjct 1131 AGTAGAAGTCGCCGTGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCT 1190 Query 9431 TTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGCCGGG 9490 |||||||| | ||| || || || ||||||| ||||| ||| | Sbjct 1191 CGGCGCCGTTC---CACAGCTTGATGTTCTCGCCCTTCAGGTCGACGTCGACCTCTTTCG 1247 Query 9491 CAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGACAGAAAAA 9550 | ||| ||| |||||| ||||||| | ||||||| || ||||||| |||| Sbjct 1248 CGAAGTCGACGATGTAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAA 1307 Query 9551 TCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAAAACGTCG 9610 || ||| | || |||| ||| |||||||||||||| ||||| ||| | |||| Sbjct 1308 GCTTGTTGCGCCCCTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCG 1367 Query 9611 CGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCGCGATACC 9670 | || ||||| || | ||||||||| |||| | ||| || | | | | ||| ||| Sbjct 1368 CACCGATCTGCCGCGCTTTCAGGATGGCGCGCAGGCGCTGGT--ACTGCTGATCGA-ACC 1424 Query 9671 AGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCGATAGCCT 9730 ||| | || | ||| | ||| | | |||||| |||| | Sbjct 1425 AGTTCTGATGGAAAGGGAAGTTCGACTCGCGCAGCTTGGTTTCCAGCAGCGCGATCTGGT 1484 Query 9731 CGTCACTGAAAAAATTCTTT----TTCGGTTTGCG---CCGCCCGCCTTTGTTGCGGTTA 9783 || | ||| | ||| || || || ||||| | || || | ||||| Sbjct 1485 CGGCGCTG----AGTTCGTTGCGCTTGGGCTTGCGCTTCGGCGCGGC---ATTGCGCGCC 1537 Query 9784 GCGATGTTCGGATTAAGGTCTGCCTCGTTGCCGGTCTGGCTGTAGCGGTTTACCCGTGCC 9843 |||||||||||||| | ||| | ||| |||||||| ||| | || || ||| Sbjct 1538 GCGATGTTCGGATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCC 1597 Query 9844 AGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTGC 9903 || || | ||| || || || |||||||| |||||| |||| |||||||| |||| | Sbjct 1598 GTGCGCTCCAGCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCC 1657 Query 9904 GGTTTGATGATGAGCTGGGTCAGCC 9928 | || | ||| |||||| |||||| Sbjct 1658 GTCTTCAGGATCAGCTGGATCAGCC 1682 >seq15326 Length=957 Score = 104 bits (114), Expect = 4e-18 Identities = 124/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 10544 GCGCTGTTTGCGAAAATCACCCCGACCGATGACCTTATCGCGATGAACAAGGCCGCGC-A 10602 || || | |||| | ||| | || ||||| || || |||||||| |||||| |||| | Sbjct 137 GCCCTCTATGCGCAGATCTCTCCCACCGACGAACTGATCGCGATCAACAAGAA-GCGCCA 195 Query 10603 GAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTTGCCAATACCGGCAAATGTTATCT 10662 |||| |||| | ||| | ||| | | |||||| || ||| | |||| ||| ||||| Sbjct 196 GAAGATCTACAGCTCGCTCGAAGTGCGGCCGAAGTTCGCCGACACCGACAAGGCCTATCT 255 Query 10663 GGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTCGGCACGGAA 10708 | | || |||||||||||||| |||| || ||||||||||| ||| Sbjct 256 GATCGGCCTGGCCGTCACCGACAACCCTGCCAGCCTCGGCACTGAA 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93410211565794