Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq9234 228 2e-55 >seq9234 Length=2011 Score = 228 bits (252), Expect = 2e-55 Identities = 835/1285 (65%), Gaps = 47/1285 (4%) Strand=Plus/Plus Query 1561 CTGGAATACACCGAGACCGAGGCCTGTTGCGTCAATGCCGATGTATTCGACGTTGTATTT 1620 |||||| || || ||| ||||| || ||| |||||||| | |||||||||||| Sbjct 436 CTGGAACACGCCAGCACCCAGGCCGGTCTTGTCGATGCCGATATGCACGACGTTGTATTG 495 Query 1621 CTCAGTGAGCCTGCGGATGGCTTCTGCCTGCGCGGCAAAGTCCATGCCTTTCCACTGGTG 1680 || |||| || |||||||| || |||||||| | |||||| ||| || |||| | Sbjct 496 CTGGGTGATCCGACGGATGGCCTCGGCCTGCGCCTCGAAGTCCGAGCCCTTGAACTGCTC 555 Query 1681 ACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGGCGGCGCGAGTACGACACATCC 1740 || | || ||||| |||||||| || | || ||||||||||| || || | | Sbjct 556 GCGATGTAGGATGCGGAACTTGCCGCCTGGCACGCGCGGCGGCGCGACCACCACCAGTGC 615 Query 1741 GGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCAATCCAGACCGGGC-GCGAGCCGAATG 1799 || ||||| ||| || ||||||||||| | ||| ||||| | |||| | Sbjct 616 AGCGGCATCGCCCTTGTCTGATGGGTCGTAGCCGACCCACACCGGAAAGTGAGC-----G 670 Query 1800 GATGGTCGG--CGAACGGGGC--GAAGTC-CTCC-CATGTTTCCATCACGTCGACCATGC 1853 | || || | || | ||| || ||| |||| ||| | ||| | ||||| ||||| Sbjct 671 TAGGGCCGAATCCAAAGCGGCTTGACGTCGCTCCACATCTC-CCAGCT-GTCGATCATGC 728 Query 1854 AGCGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACATAA 1913 | ||||| || | | | || ||| | ||| | ||||||| |||| |||||| | Sbjct 729 AAGCCTGCATCTGCGCCAGCGTGAACAGCGACAAGCTGTCGTCGATGAACTGGCACATGA 788 Query 1914 ACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAGGG 1973 |||||||| || || || |||| ||| | |||| | ||| |||||||| Sbjct 789 ACAGGTTCGCGAACTCGTCGAGGCTGTATTCCTCGCGCAGCTCGGCGATATCGAACAGAT 848 Query 1974 TGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAGCGC 2033 | |||| || | |||||| || | ||||| || | ||||| | | || || Sbjct 849 CGAAGCCCATCGCGACGGCGTCTTCCACCGTGACGATGTCGCGCCATTTGCGATCGAGGC 908 Query 2034 AAAGAAGCCCACCGGCGAGCGCGCTGTGACTGATGTCGATTTCGATGCGGTCAGCGGCAC 2093 || | || ||| ||| |||| ||| ||||||| || | |||| Sbjct 909 CCAGCATGCCGCCGCGCAGCATCTTGTGGCTGGTGTCGATGCGGACGTGGTCCTTTT--- 965 Query 2094 TGGCGCGCCCCTTGTTGAACAGCTCGCCAGACCAGAAGGGGTAAGCGCCGTGCGCCAGCG 2153 | ||||| |||||||| ||||| | |||||| | | || |||||| || || Sbjct 966 TCGCGCGGCCCTTGTTCCGGTCGTCGCCGGTCCAGAACCCGAAGGCCTCGTGCGACATCG 1025 Query 2154 TGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGATGCTTTTGCGAGGCCATGCCCGATGCGA 2213 || || ||||| || || || |||| ||||| ||||| ||||| | || | Sbjct 1026 CCGAGGGCGTCGAGAAATAGGTCTTGCGCCAGTGCTTGTGCGAAGCCATCGCACTGGCCA 1085 Query 2214 CTTTGCGCAGCTTC-TGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCG 2272 ||| | || | |||| | |||| ||| || | |||||||| || | ||||||| Sbjct 1086 GCTTGTTGATCTGCCTGAAGCGT-GGGACCCAAAAAAATTCATCGAAGTAGAAGTCGCCG 1144 Query 2273 TTATGGCTCTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTG 2332 | || |||||| || || ||| |||||||| || || ||||||| |||||||| Sbjct 1145 TGATAGCTCTGGGCCGTCATGGCGTTGGTGCCAAGGAAGATCAGCTCGGCGCCGTTCCAC 1204 Query 2333 CCGATGACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATG 2392 ||| || ||||| ||||||||||||| ||| | ||| || | || |||| Sbjct 1205 AGCTTGATGTTC---TCGCCCTTCAGGTCGACGTCGACCTCTTTCGCGAAGTCGACGATG 1261 Query 2393 TATTCCCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCG 2452 || |||||| || ||||||| || ||||||| |||| || ||| ||| Sbjct 1262 TAGCTGCGGAACTGGTGGGCCTGCGCCTTCGACGCCGACAAGAAAAGCTTGTT-GCGCCC 1320 Query 2453 GTCTTGAGCGCGCG-CAGCAGTGCCTCGCGGGAAAAGTAGAACGTCGCGCCAATCTGGCG 2511 |||| ||| || ||||| |||||||| |||||||| | ||||| || ||||| || Sbjct 1321 CTCTTTCGCGGCCGAGAGCAGCGCCTCGCGCGAAAAGTAATAGGTCGCACCGATCTGCCG 1380 Query 2512 GGATTTGAGAATATCGCGAATACGGTGCGCCAGTCCTGCCCGGTACCACTGCAACTGGTA 2571 | ||| || || |||| | || | | | | ||| | | |||| | | ||| | Sbjct 1381 CGCTTTCAGGATGGCGCGCAGGCGCT--GGTACTGCTGATC-GAACCAGTTCTGATGGAA 1437 Query 2572 TTCGAA---AGACTGGTCGAAGAAAATTTCTTCCAGCTTTGCGACAGCCTCATCGCTGAA 2628 ||| |||| | || || | ||||||| |||| || ||||| Sbjct 1438 AGGGAAGTTCGACTCG-CGCAG--CTTGGTTTCCAGCAGCGCGATCTGGTCGGCGCTG-- 1492 Query 2629 AAAGTTCTTT----TTCGGCCTCTTACGCTCCCCCTTG---TTACGGTTGGCAACGTTGG 2681 ||||| || || || ||| |||| | | | || || || | ||| | Sbjct 1493 --AGTTCGTTGCGCTTGGG---CTTGCGCTTCGGCGCGGCATTGCGCGCCGCGATGTTCG 1547 Query 2682 GGTTAAGGTCGGCCTCGTTGCCGGTCTGGCTGTAGCGGTTGACGCGCGCCAGTCGCTCAA 2741 | || | ||| | ||| |||||||| ||| | |||||||||| ||||| | Sbjct 1548 GATTCAAGTCCCCTTCGCGCCCGGTCTGCTGGTACTTCTCGACGCGCGCCGTGCGCTCCA 1607 Query 2742 TCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCGCCTGACTTTTGCGGCTTGGCGA 2801 ||||||||| || ||||||||||| ||| |||||||||| | ||| | || ||| || Sbjct 1608 GCTGCCGCCCCAGAAGGTCAATCTCCTTGTAGTCGCCGCCGGTCTTCTCCGTCTTCAGGA 1667 Query 2802 TGAGCTGAATCAGGCGCGCCTCAAG 2826 | ||||| ||||| | | ||||||| Sbjct 1668 TCAGCTGGATCAGCCTCACCTCAAG 1692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94996959911170