Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11176 145 2e-29 seq18158 102 2e-16 >seq11176 Length=1573 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || || || || || || |||||||| | | || Sbjct 718 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 659 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||||||||||||| || ||||| || || || || || || |||| || Sbjct 658 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 599 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || |||||| ||| || |||||||| || ||||| || || ||||| Sbjct 598 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 539 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | |||||||||||| | ||||||| Sbjct 538 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 496 >seq18158 Length=729 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || || |||||||| || || || ||||| | ||||| |||||||| ||| Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 68 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || |||||||| |||||||| ||||| || | ||||||||||| ||| Sbjct 69 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 128 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | || |||||||| | ||||| Sbjct 129 GTCAATGTTTTTACAAAAATTTGCAT 154 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || || ||||| || |||| ||| |||||||||||||| ||| Sbjct 361 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 420 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||||| ||| || || | ||||| || || || || ||| Sbjct 421 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCTAATGTGATTGTTTTACCGGTAAGA 480 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || ||||| | ||||| Sbjct 481 GTTTTAACAAAGATTTGCAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158796110270495