Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2665 145 2e-29 seq11176 141 2e-28 seq15497 116 9e-21 seq18158 114 3e-20 seq7472 100 7e-16 seq18386 98.7 2e-15 seq13289 96.9 8e-15 seq4902 91.5 4e-13 seq13397 84.2 5e-11 >seq2665 Length=5979 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 7533 AATATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTAT 7592 |||||| | ||||||| |||| ||||||| || ||| |||| || ||||| ||| |||| Sbjct 1631 AATATTTATTGGTAATGACCAAATTTACAATGTAATTGTTACAGCTCATGCTTTTATTAT 1690 Query 7593 GATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTT 7652 ||||| ||| | || || || |||| || || || || ||||||||||| ||||| || Sbjct 1691 AATTTTTTTTATAGTAATACCAATTATAATTGGAGGATTTGGAAATTGATTAGTTCCATT 1750 Query 7653 AATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACT 7712 ||| | || || |||||||| |||||||| | | || |||||||| || ||| || | Sbjct 1751 AATATTAGGAGCCCCTGATATAGCTTTTCCTCGAATAAATAATATAAGATTCTGAATATT 1810 Query 7713 ACCGCCTTCCTTA 7725 ||| ||||| ||| Sbjct 1811 ACCTCCTTCATTA 1823 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||| |||||||||||||| || || ||||| ||||| | Sbjct 2226 ATACTTCAGGATGCCCAAAAAATCAAAATAAATGTTGATATAGAATTGGATCTCCTCCTC 2167 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | ||||||||| || ||||| || |||| ||| ||||| Sbjct 2166 CAATTGGATCAAAGAATGATGTATTTAAGTTTCGATCTGTTAA 2124 >seq11176 Length=1573 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || ||||| || || | ||| ||||||| ||| || Sbjct 718 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 659 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| ||||| || || || || ||||| || Sbjct 658 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 599 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||| || ||| |||||| || || || | ||||| || | Sbjct 598 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 539 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||||||||| |||| || | |||||| Sbjct 538 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 496 >seq15497 Length=938 Score = 116 bits (128), Expect = 9e-21 Identities = 110/139 (79%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || |||| ||||||| |||| ||||| |||| ||||||||||||| ||||||||| Sbjct 351 TATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGC 292 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | || | |||||| || |||||||||| | |||||| |||| | | |||| || Sbjct 291 TTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGG 232 Query 7844 AATATTT-ACGCGTTAGCT 7861 | | ||| ||||||||||| Sbjct 231 AGTGTTTCACGCGTTAGCT 213 >seq18158 Length=729 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || ||||| || || || || || || || ||||| ||||| || ||| Sbjct 9 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 68 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| |||||| ||||| || | || || ||||| ||||||||||||||| Sbjct 69 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 128 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||| || | |||||| Sbjct 129 GTCAATGTTTTTACAAAAATTTGCAT 154 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| || ||||| || ||||| || |||||||| ||||| ||| | Sbjct 361 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 420 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | |||||| ||||| ||||| || || || || | | Sbjct 421 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCTAATGTGATTGTTTTACCGGTAAGA 480 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 481 GTTTTAACAAAGATTTGCAT 500 >seq7472 Length=2552 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7737 GGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTTC 7796 |||||| ||||| ||||| ||| ||||||||||||||||||||||||| | | | | Sbjct 493 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATACTCCACCGCTTGTGCGGGCCCC 552 Query 7797 CGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGCG 7855 ||||| || |||||||||| | |||||| |||| | | |||| || | || ||||| Sbjct 553 CGTCAATTCCTTTGAGTTTCAGTCTTGCGACCGTACTCCCCAGGCGGCGAACTTAACGCG 612 Query 7856 TTAGCTT 7862 ||||||| Sbjct 613 TTAGCTT 619 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 1183 TGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCA-GACTCCTACGGGAGGCAG 1125 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||||| |||| ||||| || Sbjct 1124 CAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAG 1085 >seq18386 Length=716 Score = 98.7 bits (108), Expect = 2e-15 Identities = 106/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 ||| || ||| |||||| ||||| ||||| ||| ||||||||||||| ||||||||| Sbjct 4 TATGTCAAGGCCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGC 63 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | |||||| || ||||||||||| |||||| |||| | | |||| || Sbjct 64 TTGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAGTCTTGCGACCGTACTCCCCAGGCGG 123 Query 7844 AATATTTA-CGCGTTAGCT 7861 || ||| |||||||||| Sbjct 124 TCTACTTATCGCGTTAGCT 142 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 707 TGAGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 649 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| ||||||||| | || | ||||| || Sbjct 648 CAGTGGGGAATATTGGACAATGGGGGGAACCCTGATCCAG 609 >seq13289 Length=1227 Score = 96.9 bits (106), Expect = 8e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||||| |||||| || || ||||| ||| |||||| |||||| ||||||||| Sbjct 127 ATGTCAAGGGTAGGTAAGGTTTTTCGCGTTGCATCGAATTAATCCACATCATCCACCGCT 186 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | |||||| || ||||||||||||| |||||| |||| | | |||| || Sbjct 187 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTACTCCCCAGGCGGT 246 Query 7845 ATA-TTTACGCGTTAGCT 7861 || || ||||||||||| Sbjct 247 CTACTTCACGCGTTAGCT 264 >seq4902 Length=3787 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 1926 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATGTAAGCGGAAACGTCGCCG 1985 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 1986 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 2030 >seq13397 Length=1212 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| | || |||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 919 TGAGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 977 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| |||| || ||||||||||| |||| ||||| || Sbjct 978 CAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAG 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192165061990322