Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq5 120 1e-22 >seq5 Length=40538 Score = 120 bits (132), Expect = 1e-22 Identities = 405/616 (66%), Gaps = 30/616 (5%) Strand=Plus/Minus Query 26880 CCGTCTTCCTTGACTGCGATGTAATTATTCACGTCACGCGAATAGAGTGACTTGTAGATG 26939 ||||| ||||| || |||||||| |||||||| || ||||| | | | || Sbjct 15680 CCGTCGCGCTTGATCGCAATGTAATTGTTCACGTCGCGGGAATACAACGCCAGATATTCT 15621 Query 26940 GTGCCCTCGGTCTGAAATCCTGTGTCCTGCTCCCACTG-AGCGATGATCTGGTCCAT-GA 26997 || | || |||| ||| || ||||| || ||||| | | || |||| ||||| | Sbjct 15620 GTCGCTTCAGTCTCAAAGCCGGTGTCGTGTTCCCATTCCATCG-TGATGACTTCCATCGG 15562 Query 26998 TGTGCTGCCCCTT---GCGCGGGCACTTAATCACGATGCCGTCAGTGTTCGCGCTGACCA 27054 ||| |||| ||| ||||| ||||| || |||||||| ||||| || || | Sbjct 15561 CGTGA----CCTTATCGCGGGGGCATTTAATAACAATGCCGTCGGTGTTTGCCGAAACAA 15506 Query 27055 CATGGATGCCCGCCAGTTCCAGGCGCTCGATCAGCATCAGTAGGCTTAGCTGGCCAGTCA 27114 || ||| || | |||||| || || |||| ||| || | ||||| || || | Sbjct 15505 CACTGATACCTTCAGCTTCCAGTCGTTCAATCAACATAAGCAATGACAGCTGCCCGGTGA 15446 Query 27115 CCGTCACCTGGATCAGCAGGTCAGGGGAGTATAGGATCGAATACTTGCTG--CCCAGCTT 27172 ||| ||||||||||| ||||| || || || ||||| | || || | ||| Sbjct 15445 TCGTGGTCTGGATCAGCAACGTTGGGGAATACAGAATTGAATAG--GGTGAACCGAACTT 15388 Query 27173 ACCGAACGACCCGTTGATCGTAATCTTGAGTGAGTCGGCCGTTACCTTGTCACC---CCG 27229 |||||| || ||||||||||| ||||| || || | | || |||||||| || || Sbjct 15387 ACCGAATGAACCGTTGATCGTGATCTTCAGCGAACTGTCTGTCACCTTGTCGCCGCAACG 15328 Query 27230 TTCCTTGGCTGCAATACGTCGATCAACGATGTTCTTATAC----ACGTGAAGGAACGTCG 27285 || ||| || | | | ||| || || ||| | || ||| |||||||| | |||| Sbjct 15327 TT--TTGCCTTTAGT-CTTCGTTCGACAATGCTGTTGTACACAGACGTGAAGTA--GTCG 15273 Query 27286 GGCCAAGGTGATGCGGGTACAGACCAAGGTTCAAGATGATGAACGGATAGTACGACGTCA 27345 | | |||| || | ||| || ||||| ||||| ||| ||||| | || Sbjct 15272 CCCATATTTGAT--GGTTTCAGTCCGCAGTTCAGAATGATACGCGGGTAGTAGCTGGCCA 15215 Query 27346 CGTCCTTGTCGATCAGGATGTAGTTTTCGTCGCTGTGGTGCGCTGCTGTGCTTTCGCTGC 27405 | || || || | ||| ||||| | |||||||| |||| || | | |||| | Sbjct 15214 CATCTTTATCAAACAGTATGTACTGGTCGTCGCTACGGTGAGCGACACTCTTTTCTGTCG 15155 Query 27406 TATGCAGACCGCCGATGCCCAT-GCGATACACGCTGCCGTTGATATCAAGCTGGAGCGCC 27464 ||| || || ||||| ||||| ||| || ||||| ||| | | ||| || || Sbjct 15154 AATGTAGGCCACCGATACCCATAGCG-TAGGTGCTGCTTCCGATCTTGATCTGCAGATCC 15096 Query 27465 TTAATCTCTTCAGGCA 27480 ||||| |||| |||| Sbjct 15095 TTAATTTCTTTCGGCA 15080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187236304754368