Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq5 170 5e-38 >seq5 Length=40538 Score = 170 bits (188), Expect = 5e-38 Identities = 419/625 (67%), Gaps = 29/625 (5%) Strand=Plus/Minus Query 7192 TAAATCGACTACCGTCCAGGTTACTGACGCTGTCGGCATGCTGGAAACCTACGCTGAAAT 7251 |||||| || |||| |||||| ||| || ||| ||| ||||| | ||| ||||| | Sbjct 40457 TAAATCCACCACCGCACAGGTTGATGAAGCCTGCGGTATGTTGGAAGCGTACTCTGAAGT 40398 Query 7252 CGATAAATCTCTGGCTGATCTGAACGGCAATACTGCTGAATTCCGCCTGTCTGAAGACCG 7311 |||||| |||||| || |||||||| ||||| || |||||||| |||| |||||| | Sbjct 40397 CGATAAGGATCTGGCCGAACTGAACGGTAATACCGCGCAATTCCGCTTGTCCGAAGACAG 40338 Query 7312 TGCATTTATCGAAGCGATGAATCAGCAGATGGCGCAGACGCTTTTTTATGGCGACTCCAG 7371 ||||| | ||||| |||||||| |||||| || || ||||| || || || | Sbjct 40337 CGCATTCCTGGAAGCCATGAATCAAACGATGGCATCCACTCTGTTTTACGGTAAC-CCGG 40279 Query 7372 CGTAA-ATCCTCAGCAGTTTATGGGCCTTTCATCTCGCTATTCCAGTCTGTCTGCTGGCA 7430 | | | ||| |||| || | || || || | || |||||||| ||| || | Sbjct 40278 CAAACGACCCTAAGCAATTCTTAGGTCTGGCAACACGTTATTCCAGCACCAGTGCAGGTA 40219 Query 7431 ACGCGCAGAACATTATCGATGCAGGCGGTACCGGTACAGATAACACCTCTATCTGGCTGG 7490 ||| ||||| ||| | | | || || ||||| | | ||||| || |||| |||| Sbjct 40218 ACGGCCAGAATATTCTGAAAGGTGGTGGCTCCGGTTCTGTGAACACATCCATCTATCTGG 40159 Query 7491 TTGTTTGGGGTGAAAATACTGTTCACGGCATTTTCCCGAAAGGCCAGAAAGCTGGTTTGC 7550 |||| ||||||||||| ||||| | | ||||||||||| ||||| ||| || Sbjct 40158 TTGTCTGGGGTGAAAACTCTGTTTTCTGTCCATTCCCGAAAGGTTCCAAAGCCGGTCTGA 40099 Query 7551 AGATGGAAGATAAAGGGCAGCAGACACT----GAAAGATGCC--GCTGGTGGTCAGTACG 7604 |||||| || | | | || | || || || || || |||| Sbjct 40098 TCCATGAAGATCTCGGTCTGAATACTGTCTGGGACAGCAACCAAGCGCGTTATCAG---- 40043 Query 7605 AAGGCTACCGTACCCATTACAAGTGGGATAACGGTCTTTCCCTTCGTGACTGGCGTTACG 7664 | ||||||||||| || ||||| | || ||||| || || ||||| || | Sbjct 40042 --GCTTACCGTACCCACTATCAGTGGAAAAATGGTCTGGTTGTTAAAGATTGGCGCTATG 39985 Query 7665 TTGTGCGCATTGCAAACATCGATGTCAGCAACCTGTCAGATCCTGCCA-----CAGCGGC 7719 |||| || ||||| |||||||| || | ||| ||| | | | | |||||| Sbjct 39984 TTGTTCGTATTGCGAACATCGA---CA-CGACC-ATCACAAACAACAACTTGGCAGCGGA 39930 Query 7720 AAACATTGCGAAACTGATGGTGAAGGCACTGCATCGCATTCCTAACCGTGGC-ATGGGCC 7778 |||||| |||||| | || ||| |||| || || || | |||| ||||| | Sbjct 39929 TCTGATTGCG---CTGATGTCGCGTGCGCTGGATCGTATCCCGAATC-TGGCAATGGGTC 39874 Query 7779 GCCCTGTTTTCTATATGAACCGCAC 7803 ||||||| ||||| ||||||||||| Sbjct 39873 GCCCTGTGTTCTACATGAACCGCAC 39849 Score = 82.4 bits (90), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 5459 GAAGAAAAGCTCCTGATGCTGGGGCCGGTACTGGAACGCCTGAACGACGAATGCCTGAAC 5518 ||||||||||| |||||||||||||||| |||||||| || || |||||| || || Sbjct 2435 GAAGAAAAGCTATTGATGCTGGGGCCGGTGCTGGAACGTTTGCACAACGAATTGCTTGAC 2376 Query 5519 CCACTGATTGACCGTGCATTCTC---GATGATGG--TGCGTAAGAACATGCTGCCACCGC 5573 || |||||||| | | || | |||||||| | || | |||| ||||| | Sbjct 2375 CCGCTGATTGAACAGACGTTTGCACGGATGATGGAATCCG-----GCGTGCTACCACCAC 2321 Query 5574 CGCCGGACGTGATGGAAGGTATGCCTCTGAAAGTGGAATACATCTCCGTCATGGCTCAGG 5633 | ||||| | || ||||| | | ||||| || || | | | ||| | |||| |||| Sbjct 2320 CACCGGAAGAACTGCAAGGTCAGGCACTGAATGTCGAGTTCGTGTCCATGTTGGCACAGG 2261 Query 5634 CGCAG 5638 | ||| Sbjct 2260 CACAG 2256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133472408197132