Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10254 122 7e-23 seq9793 98.7 8e-16 >seq10254 Length=5829 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| || | |||||||||||||| ||||| ||||| | Sbjct 5277 TTCCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 5218 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | |||||||| || || || || | || || | |||||||| || Sbjct 5217 ACAGGGTGCGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGG 5158 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| |||||| | ||| || || | |||| Sbjct 5157 GAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCA 5098 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| ||| |||||||||||||| || || ||||| || |||||||| || Sbjct 5097 CCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCATCTT 5046 >seq9793 Length=2388 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || || |||||||| ||| | |||||| ||||| || |||||||| || | Sbjct 1925 TTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAG 1984 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | || |||| ||||| || ||| | || || | |||||||| || Sbjct 1985 AAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGG 2044 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| || || | ||| || || | ||| Sbjct 2045 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGA 2104 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| || || || ||||| || ||||| Sbjct 2105 CCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | |||||||||||| || ||||| ||||| | Sbjct 953 CCACCACGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1012 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || || ||||| || || | || || | |||||||| ||| Sbjct 1013 AGAGTGCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 1072 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | ||| |||||| | ||| Sbjct 1073 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACC 1132 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||||||||| || | || || || || || ||||| Sbjct 1133 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||||| ||||| ||||||| Sbjct 1181 CCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAG 1240 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||| |||||| || || | || | ||| ||||| || ||| Sbjct 1241 AGGGTGCGCCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGG 1300 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||||| ||||| ||||| ||||| | ||| || || | ||| || Sbjct 1301 ATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTC-CGAAGCTTCGAC 1359 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || || ||||| || || |||||||| || || ||||||||| Sbjct 1360 TTCCAATGTGATTGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCATT 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422205513965312