Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9793 138 1e-27 seq10254 125 7e-24 seq8564 91.5 2e-13 >seq9793 Length=2388 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| || | Sbjct 1179 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGGCTTCT 1120 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 1119 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 1061 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || ||||| || || || | ||||| ||| |||||||| Sbjct 1060 GCAACGTCTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGCACTCTCTCTGACTACAA 1001 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || ||||| || Sbjct 1000 CATCCAGAAGGAGTCCACTCTCCATCTGGT 971 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| |||||| | || || || || ||||| | || |||||||| | Sbjct 1408 AATGCAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTC 1349 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || |||| |||||||| || |||||| | || | Sbjct 1348 GGACACGATCGAGAACG-TGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATC 1290 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| || | |||| ||| || |||||| |||| || | |||||||||| ||||||| Sbjct 1289 AGCAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACA 1230 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| |||| || || Sbjct 1229 ACATCCAAAAGGAGTCCACCCTCCA 1205 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || ||||||| | Sbjct 1635 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGC 1576 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| ||| || | ||||| || || ||||| | ||||| Sbjct 1575 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 1516 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || ||||| || || || | || || || |||||||||| Sbjct 1515 CAGAGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAAC 1456 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||| | |||||| | ||||| || || Sbjct 1455 ATCCAGAAGGAATCTACACTCCATTTGGTGTTGAGGTTGAGAGGAGG 1409 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || ||||| || || Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | ||||| || || |||||| | |||||| Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || ||||| |||| || | | ||||| || || ||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||| | ||| | || ||||| || || Sbjct 1973 ATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGGTTGAGAGGTGG 1927 >seq10254 Length=5829 Score = 125 bits (138), Expect = 7e-24 Identities = 155/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 40682 TCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||||| | ||||||| ||||| || || | || ||||| ||||||||| | || || | Sbjct 5042 TCCGAAGA-TGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGG 5100 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 | | | ||||| | | | | | || | || || | ||||| |||||||| ||| Sbjct 5101 AGGGAAGCGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCC 5160 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | ||||||||||| || |||| ||| || || || ||||| || | |||||||| || Sbjct 5161 CAGACCAGCAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCG 5220 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| |||||| |||| || || Sbjct 5221 ACTACAACATCCAAAAGGAGTCCACCCTCCA 5251 >seq8564 Length=72546 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| | ||| ||||||||||| || || || || ||||| |||||||||||| Sbjct 47596 TTCATCTCTCGCGTTCTGGCCTTTTTTGCGGCTTCGGATGGAATCGTTAACGAGAATCTG 47537 Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAG 116863 ||||||||||| | || ||| | | | ||||| |||| ||||| || || || Sbjct 47536 ATCGAGCGTTTCAATGCCGAAGTGAAACTTCCTGAGGCTAGGTGTTTCTATGGATTCCAA 47477 Query 116864 ATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || ||||||||| | |||||||| ||||| || | || || || || || Sbjct 47476 ATTATGATGGAGAACATTCACTCGGAGATGTACTCTATTCTGATTGATACATA 47424 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTT-CGGC 117034 |||| |||||||||| ||||| || |||||| | | ||||| | ||| ||| Sbjct 47321 TCAAGAAGAAGGCCGATTGGGCTATGAAGTGGATCTCTGAT-GAGAGATCTTCTTTCGGA 47263 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 | ||||| || || || || || |||||| | ||||| ||||||||||| || || Sbjct 47262 ACAAGACTGGTCGCTTTTGCTGCTGTGGAGGGCATATTCTTCTCGGGCAGTTTTGCTTCC 47203 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || |||||| | ||| || || | ||||| || ||| || ||||| ||| | ||| Sbjct 47202 ATCTTTTGGTTGAAGTCTCGTGGTTTAATGCCTGGACTGGCTCAGAGCAATGAGTTGATC 47143 Query 117155 TCCAGGGACGAGG 117167 || ||||| |||| Sbjct 47142 TCTAGGGATGAGG 47130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515152015416320