Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10254 147 2e-30 seq9793 107 2e-18 >seq10254 Length=5829 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| ||||| |||||||| ||| || ||||| |||||| Sbjct 5257 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 5198 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||||||| |||| ||||| ||||| || || || ||||||||||||||| Sbjct 5197 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 5138 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| |||||| | | ||| ||||| | ||| | || ||| Sbjct 5137 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTG 5078 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || ||||| ||||| Sbjct 5077 CCGGTCAAAGTCTTGACGAAAATTTGCAT 5049 >seq9793 Length=2388 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | || ||||||||||| |||| |||||| || || || |||||||| ||| Sbjct 1409 CCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAA 1468 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| ||||| |||||||| ||| |||| | | ||| || || || || Sbjct 1469 AGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGG 1528 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||||||| || ||| || || | |||| ||||| || || ||| Sbjct 1529 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACC 1588 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| || || || || |||||||| Sbjct 1589 TCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| | |||||||||||| || || ||||| |||||||| || || Sbjct 1783 TTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1842 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | ||||| |||||| || |||||||| | ||| | || ||||| || Sbjct 1843 GCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTG 1902 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || ||||||||||| Sbjct 1903 AGAGTTTTGACGAAAATCTGCAT 1925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433775242802944