Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9793 109 6e-19 seq6028 102 9e-17 seq4534 102 9e-17 seq6751 98.7 1e-15 seq9670 96.9 4e-15 seq8467 96.9 4e-15 seq8986 95.1 1e-14 seq10307 93.3 5e-14 seq8985 93.3 5e-14 seq5970 93.3 5e-14 seq4529 93.3 5e-14 seq4482 93.3 5e-14 seq6753 89.7 6e-13 >seq9793 Length=2388 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || | |||||||||||| | ||| ||||| || || ||||| || | Sbjct 1408 TCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGA 1467 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || || || || || ||||| || | || ||| ||||| | || Sbjct 1468 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGG 1527 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||| ||| ||| |||| || | | ||||||||| | ||| || Sbjct 1528 GATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAAC 1587 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 1588 CTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 >seq6028 Length=73961 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| |||||||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 59881 AAAAGTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 59822 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 59821 TTACCACTATACTACCGAGGA 59801 >seq4534 Length=35417 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||||| |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 22333 AAAAATTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 22274 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 22273 TTACCACTATACTACCGAGGA 22253 >seq6751 Length=7500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/83 (87%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| ||||||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 4147 AAAAATGTTTTCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 4206 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 4207 ACTTACCACTATACTACCGAGGA 4229 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 678 AAAAATGTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 619 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 618 ACTTACCACTATACTACCGAGGA 596 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| || |||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 1677 AAAAATGTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 1736 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 1737 ACTTACCACTATACTACCGAGGA 1759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| ||||||| Sbjct 6884 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCACTA 6825 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 6824 TACTACCGAGGA 6813 >seq9670 Length=29525 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 4946 AAAAACTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 4887 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4886 TTACCACTATACTACCGAGGA 4866 >seq8467 Length=51838 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| |||| |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 9539 AAAGATTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 9480 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 9479 TTACCACTATACTACCGAGGA 9459 >seq8986 Length=6065 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 60041 CAAATTAACGTTTATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCG 60098 || || || ||| | |||||| || |||| |||| ||||||||||||| |||||| | Sbjct 2933 CACATAAAAGTTCACAAAAAATGTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCA 2874 Query 60099 CGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||| ||||| ||||||||||||||||||| Sbjct 2873 CGTGACAGGCGCGGATACTTACCACTATACTACCGAGGA 2835 >seq10307 Length=3621 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAA--TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||| ||| |||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 1103 AAAAACGTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 1162 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 1163 ACTTACCACTATACTACCGAGGA 1185 >seq8985 Length=4986 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| ||| Sbjct 3546 TTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACC 3487 Query 60122 ACTATACTACCGAGGA 60137 |||||||||||||||| Sbjct 3486 ACTATACTACCGAGGA 3471 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 4748 AAAAACTACCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 4689 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4688 TTACCACTATACTACCGAGGA 4668 >seq5970 Length=5528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAA--TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||| ||| |||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 4177 AAAAACGTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 4118 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 4117 ACTTACCACTATACTACCGAGGA 4095 >seq4529 Length=23528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || |||| |||| ||||||||||||| |||||| | ||||||||||| |||| Sbjct 7316 AAAACGTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATAC 7257 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 7256 TTACCACTATACTACCGAGGA 7236 >seq4482 Length=132840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||| |||| |||| |||| ||||||||||||| |||||| | ||||||||||| || Sbjct 120864 AAAAGTTTTTCCTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGAT 120923 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 120924 ACTTACCACTATACTACCGAGGA 120946 >seq6753 Length=5859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||| | ||||||||||| ||||| ||||||| Sbjct 4533 CTCCCCGGCCGGGAATCGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTTACCACTA 4474 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 4473 TACTACCGAGGA 4462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571743034984960