Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10254 134 1e-26 seq9793 116 3e-21 >seq10254 Length=5829 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || |||||||||||| ||| |||| | || ||| Sbjct 5257 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 5198 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| ||||| |||| || || ||||| || || | ||||||||||| Sbjct 5197 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 5138 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | |||| | ||||||||||||| ||| || |||||| Sbjct 5137 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTG 5078 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || |||| |||||| || || |||||||| || Sbjct 5077 CCGGTCAAAGTCTTGACGAAAATTTGCATCTT 5046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||| || || ||||| || || | || ||||||||| || || Sbjct 5419 TTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 5360 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | | || | |||| ||||||| ||| || ||||| || || Sbjct 5359 GCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGTG 5300 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||| Sbjct 5299 AGGGTCTTCACAAAGATTTGCAT 5277 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||| || || ||||| || || | || ||||||||| || || Sbjct 5729 TTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTG 5670 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | | || | |||| ||||||| ||| || ||||| || || Sbjct 5669 GCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGTG 5610 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||| Sbjct 5609 AGGGTCTTCACAAAGATTTGCAT 5587 >seq9793 Length=2388 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| || || ||||| || || || |||||||| |||||||||||| Sbjct 1409 CCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAA 1468 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || || ||||||||||||||||| ||||| | ||||||||| || || Sbjct 1469 AGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGG 1528 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| ||| || | | | |||| | | || ||| Sbjct 1529 ATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACC 1588 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| || ||||| |||||||| ||||| ||||| Sbjct 1589 TCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||| ||||||||||| || ||| | || || Sbjct 971 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1030 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| || | || || ||||| || || | || ||||||||| Sbjct 1031 AGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1090 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | |||| ||||||| ||| || |||||| Sbjct 1091 ATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTG 1150 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 1151 CCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| || ||||||||||| || ||| | || ||| Sbjct 1199 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCC 1258 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||||||||||| ||||| | || || || || || | || || |||||| | Sbjct 1259 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGA 1318 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | | || || |||| || || ||||| Sbjct 1319 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTT 1378 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| || ||||| ||||||||||| Sbjct 1379 CCAGTCAACGTTTTCACGAAGATTTGCAT 1407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | ||||| || || ||| |||||||| ||||| || || Sbjct 1927 CCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAA 1986 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || |||| |||||||||||| || || | || || ||||| || || Sbjct 1987 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 2046 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || || ||| || | | | |||| |||| ||| Sbjct 2047 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGACC 2106 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| |||| |||||||||||||| ||||| Sbjct 2107 TCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395024970139072