Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9793 107 2e-18 seq10254 91.5 1e-13 >seq9793 Length=2388 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || ||||| | || || || ||||| Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||||||| | || || |||||| Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || ||||| |||||||| | || | ||||||||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| ||||| ||| |||| || Sbjct 1973 ATCCAGAAGGAATCCACTCTCCATTTGGTGCT 1942 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||||| || ||||| || |||||| | || || ||| | | Sbjct 1925 ATGCAGATTTTCGTCAAAACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAAGCCAGC 1866 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || ||||||||||||| | || || || ||| Sbjct 1865 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1806 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 |||||| | || || ||||| || Sbjct 1805 CAGCGTTTGATCTTTGCTGGTAA 1783 >seq10254 Length=5829 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| |||| ||||| || |||||| | || || || Sbjct 5046 AAGATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGA 5105 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| |||| | || ||| | || |||||||| ||| | || || ||| Sbjct 5106 AGCGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAC 5165 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || |||||||| || || |||| || | || || ||| || Sbjct 5166 CAGCAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTAC 5225 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| || || || || || |||| || Sbjct 5226 AACATCCAAAAGGAGTCCACCCTCCACTTGGTCCT 5260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445708272061440