Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6048 107 1e-18 seq10254 104 2e-17 seq9793 96.9 3e-15 >seq6048 Length=7890 Score = 107 bits (118), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 || ||| | |||| |||||| || || ||||||||||| ||||| || ||| || Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| | || ||||||||||| ||||| || |||||||| |||||||| || || Sbjct 1849 TTGACATTGTCAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGG 1790 Query 15344 GTTTTTACAAAAATTTGCATATT---TGAAAATAAAAT 15378 ||||| || ||||||||||| || |||||| | ||| Sbjct 1789 GTTTTCACGAAAATTTGCATTTTCGCTGAAAAAACAAT 1752 >seq10254 Length=5829 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| ||| || | | | || || Sbjct 5257 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 5198 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | |||| |||||| ||||| ||||| || || ||||| Sbjct 5197 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 5138 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || ||||| ||||| || || || ||||| ||||| || Sbjct 5137 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTG 5078 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| ||| || || ||||||||||| || Sbjct 5077 CCGGTCAAAGTCTTGACGAAAATTTGCATCTT 5046 >seq9793 Length=2388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || ||||| || ||||| || || || ||||| ||||| Sbjct 1927 CCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAA 1986 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| || || | || | |||||| ||||| || Sbjct 1987 AGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGG 2046 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| |||| ||||| ||| || || Sbjct 2047 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGACC 2106 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||| || || ||||| || |||||| Sbjct 2107 TCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2154 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || ||||| |||||||| || || | | | | ||||| Sbjct 1199 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCC 1258 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||| || ||| | ||||| | ||| || || || |||||||||||||| | Sbjct 1259 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGA 1318 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || || || || | ||| || || || || || || || Sbjct 1319 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTT 1378 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| || || |||||||| Sbjct 1379 CCAGTCAACGTTTTCACGAAGATTTGCAT 1407 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| || || || |||||||| || ||| | | | ||||| | ||| Sbjct 976 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGTTG 1035 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | |||||| ||||| ||||||||||| ||||| || || Sbjct 1036 TTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 1095 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || |||||||| | || || || ||||| ||||| || || || Sbjct 1096 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTGCCAGT 1155 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 1156 GAGGGTCTTAACGAAGATCTGCATA 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362133152536512