Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9793 163 7e-35 seq8564 86.0 1e-11 >seq9793 Length=2388 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | ||| | || | ||| | ||||||||| ||||| || || ||||| Sbjct 1406 ATTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCG 1465 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| ||||||||||| || || || | |||||||| || || Sbjct 1466 GAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGT 1525 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || |||||||| || ||||| || | || ||||| | ||| Sbjct 1526 GGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCA 1585 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 1586 ACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| ||||| | || ||| Sbjct 968 AGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1027 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||||||||| || || || || | || || || || || |||||||| || ||| Sbjct 1028 TCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 1087 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | |||||| || || ||||| | || || ||| Sbjct 1088 TGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTC 1147 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 1148 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || || || | || ||||| | |||||||| Sbjct 1211 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTGTTTTCCG 1270 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | || || ||||| || || ||||||||||| ||||||||||| || || Sbjct 1271 GCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTC 1330 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| || || | ||| || ||||| ||||| | ||| Sbjct 1331 ACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGTCAACGTT 1390 Query 104543 TTTACAAATATCTGCATT 104560 || || || || |||||| Sbjct 1391 TTCACGAAGATTTGCATT 1408 >seq8564 Length=72546 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 268829 GAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTT 268888 ||||||||| || || ||| |||| || |||||||| | | ||||| |||||| Sbjct 47608 GAAGAAAGATTCTTCATCTCTCGCGTTCTGGCCTTTTTTGCGGCTTCGGATGGAATCGTT 47549 Query 268889 AACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948 ||||| ||||| | ||| ||| | || || | ||||||| || || ||||| Sbjct 47548 AACGAGAATCTGATCGAGCGTTTCAATGCCGAAGTGAAACTTCCTGAGGCTAGGTGTTTC 47489 Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT--TAATAG 269006 || |||||||| || || || || ||||| || ||||||||| ||||| | || | Sbjct 47488 TATGGATTCCAAATTATGATGGAGAACATTCACTCGGAGATGTAC--TCTATTCTGATTG 47431 Query 269007 ATACTTATAT 269016 |||| ||||| Sbjct 47430 ATACATATAT 47421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151244504089856