Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9793 152 5e-32 >seq9793 Length=2388 Score = 152 bits (168), Expect = 5e-32 Identities = 178/237 (75%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||| | ||||||||| || | ||||||||||| || | ||| | Sbjct 1401 TTTGCATTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGT 1460 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | ||| | ||| || || ||||||||| | ||||| ||||| || || | Sbjct 1461 AGTCGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGT 1520 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || ||||| ||||| | || ||||||||||| ||| ||||| || | Sbjct 1521 CTGGTGGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTC-GC-T 1578 Query 94953 GG--TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||| |||||||| |||||||| || || ||||| ||||||||||| Sbjct 1579 GGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 134 bits (148), Expect = 1e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| |||||||| || | |||||| || | ||| |||||||| || | | Sbjct 1915 AAAATCTGCATTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATG 1974 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| | || | ||| |||| ||||||||| ||||||| | | |||| Sbjct 1975 TTATAATCAGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGC 2034 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || |||||||| ||||| | || || |||||||| ||| ||||| Sbjct 2035 TGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCG 2094 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| |||||||| || || || | || ||||||||||||||||| Sbjct 2095 GACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || |||||||| | ||| || || | ||| ||| ||| Sbjct 1199 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCC 1258 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||||| | ||||| ||||||||||||||||| || || ||||||||||| | | Sbjct 1259 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGA 1318 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| ||||| | ||||| || | ||||| || ||| Sbjct 1319 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTT 1378 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | |||||||| ||||| ||||| Sbjct 1379 CCAGTCAACGTTTTCACGAAGATTTGCAT 1407 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | ||| || ||||| || | ||| || || | |||| | ||| || Sbjct 971 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1030 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| | ||||| | | |||||| ||||| ||||| ||||| ||||| | Sbjct 1031 AGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1090 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| || |||| ||||| || | |||||||| || Sbjct 1091 ATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTG 1150 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| Sbjct 1151 CCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || | ||||||||||| ||||| ||||| ||||| | || || ||||||| Sbjct 1790 CAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 1849 Query 94932 CGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 | ||| ||||| || ||| ||||| || | |||||||| || ||||| ||||| Sbjct 1850 CATTTTCGATGGTGTC-GC-TGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGAGT 1907 Query 94990 TTTCACAAAGATCTGCAT 95007 ||| || || |||||||| Sbjct 1908 TTTGACGAAAATCTGCAT 1925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448232742827520