Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10260 223 5e-54 seq5763 219 7e-53 seq5263 199 6e-47 seq6423 168 1e-37 seq4527 154 2e-33 >seq10260 Length=65024 Score = 223 bits (246), Expect = 5e-54 Identities = 198/244 (81%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| ||||||||||| |||||||||||||| || || Sbjct 30089 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAGGGAATCACCAAGCCCGCCATT 30148 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||||||||||||| | || ||| || |||| ||||||| Sbjct 30149 CGTCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATTTCCGGACTGATCTACGAAGAGACC 30208 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATAC--CG 16610 |||| ||| ||||| | ||| | ||| || |||| ||||||| | |||| ||| | Sbjct 30209 CGTGGTGTCCTGAAGGTGTTCTTGGAGAATGTGATCCGTGATGCTGT-CACT-TACTGTG 30266 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||| | |||||||||||| |||||||| |||||||||| |||| || |||| Sbjct 30267 AGCACGCCAAAAGAAAGACTGTCACCGCCATGGATGTCGTCTATGCTCTGAAGCGGCAAG 30326 Query 16671 GCCG 16674 |||| Sbjct 30327 GCCG 30330 >seq5763 Length=47425 Score = 219 bits (242), Expect = 7e-53 Identities = 205/261 (79%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||||| ||||||||||| |||||||||||||| || || Sbjct 13393 CGCCAAGCGTCATCGCAAAGTCCTTCGTGATAACATCCAGGGAATCACCAAGCCCGCCAT 13334 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||||||||||||||| |||| || | |||| ||||| | Sbjct 13333 CCGTCGTCTCGCTCGTCGTGGTGGAGTCAAGCGAATCTCCGGCCTCATCTACGAAGAAAC 13274 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| || |||| ||||| || ||| || Sbjct 13273 CCGTGGAGTTCTGAAGGTGTTCTTGGAGAATGTGATCCGAGATGCCGTCACCTACTGTGA 13214 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| ||||| |||||| |||||||| ||||||| || ||||||||||||| Sbjct 13213 GCACGCCAAACGAAAGACCGTCACCGCCATGGATGTCGTCTACGCTCTGAAACGTCAAGG 13154 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||| || Sbjct 13153 CCGTACTCTCTACGGTTTCGG 13133 >seq5263 Length=22321 Score = 199 bits (220), Expect = 6e-47 Identities = 200/260 (77%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | || || ||||||||||| || ||||||||||| || ||| Sbjct 5748 GCCAAGCGTCATCGCAAAGTCCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCATC 5807 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||||||||||||||| ||||| |||| || | |||| ||||| | Sbjct 5808 CGTCGTCTGGCTCGTCGTGGTGGAGTGAAGCGAATCTCCGGCCTCATCTACGAAGAAACC 5867 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | || ||||||| ||| || |||| ||||| || ||| |||| Sbjct 5868 CGTGGTGTTCTCAAAGTCTTCCTGGAGAATGTGATCCGAGATGCCGTCACCTACTGCGAG 5927 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| |||||||| | ||||| || ||||||| |||||| Sbjct 5928 CACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCGCTGAAACGCCAAGGC 5987 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 5988 CGTACCCTCTACGGTTTCGG 6007 >seq6423 Length=58865 Score = 168 bits (186), Expect = 1e-37 Identities = 194/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || ||||||||||| || ||||||||||| || || Sbjct 23654 CGCCAAGCGTCATCGCAAAGTCCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 23713 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||||||||| ||| | |||| || | |||| ||||||| Sbjct 23714 CCGTCGTCTGGCTCGTCGTGGTGGAGTGAAGAGAATCTCCGGCCTCATCTACGAAGAGAC 23773 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||| | ||| || ||| ||||| || ||| || Sbjct 23774 CCGTGGTGTTCTGAAGGTGTTCTTGGAGAATGTCATCAGAGATGCCGTCACCTACTGTGA 23833 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | |||||||| | || | ||||| Sbjct 23834 GCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTGGTCTATGCCCTCAAGAGACAAGG 23893 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 23894 CCGCACCCTCTACGGTTTCGG 23914 >seq4527 Length=22061 Score = 154 bits (170), Expect = 2e-33 Identities = 184/244 (75%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || | ||||||||||| || ||||||||||| || || Sbjct 3642 GCCAAGCGCCATCGCA-AGGTCCTCAGGGATAACATCCAGGGTATCACCAAGCCCGCCAT 3700 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| |||||||||||||| || ||| | |||| || || | || || || | Sbjct 3701 CCGTCGTCTCGCTCGTCGTGGTGGTGTGAAGAGAATCTCCGGCCTGATTTACGAGGAAAC 3760 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC--TTTCC-ACTATAC 16608 |||| |||| ||||| | ||| | ||| || |||| |||||| || || ||| | Sbjct 3761 CCGTGGTGTTCTGAAGGTATTCTTGGAGAATGTGATCCGTGATGCCGTTACCTACTGT-- 3818 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCA 16668 |||||||| || | ||||| |||||| |||||||| | ||||| || |||| || || Sbjct 3819 -GAGCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAGCGCCA 3877 Query 16669 AGGC 16672 |||| Sbjct 3878 AGGC 3881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065661949376