Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3928 127 1e-24 seq2093 127 1e-24 seq9793 120 2e-22 seq2162 113 3e-20 seq9050 107 1e-18 seq8175 107 1e-18 seq9051 105 4e-18 seq9048 105 4e-18 seq8832 105 4e-18 >seq3928 Length=637 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 182 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 241 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||| ||||||| Sbjct 242 TAATCCATTCATACGCGTCACTAATTAAATGACGA 276 >seq2093 Length=1307 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1108 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 1167 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||| |||||||||||||| ||||||| Sbjct 1168 TAATCCATTCATACGCGTCACTAATTAAATGACGA 1202 >seq9793 Length=2388 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || || ||| ||||||||| || ||||| || | Sbjct 1179 TACCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCG 1238 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || || ||||||||||| || || | | ||| ||||| | || Sbjct 1239 AGAGGGTGCGCCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGG 1298 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| ||| || |||||| |||| || || || | ||| | Sbjct 1299 GGATTCCTTCTTTGTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGA 1358 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||||| || || || || ||||| ||||||||||| || ||||| Sbjct 1359 CTTCCAATGTGATTGTCTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 1407 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||||||| || | ||||||||| |||||| ||||| || || || |||| Sbjct 1923 CATT-CCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAAT 1981 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | | || || ||||||||||||||||| || || ||||| || || | Sbjct 1982 CAGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTG 2041 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||||| |||||| || || ||| ||||| | || || || | Sbjct 2042 GGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCT 2101 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | || || || || || |||||||| ||||| || |||||||| Sbjct 2102 CGACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||||||| | |||||||||||| || || ||||| || || ||||| | Sbjct 1405 CATT-CCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGT 1463 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | ||| | || || | |||||||||||| || || | | ||||| || | Sbjct 1464 CGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTG 1523 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| ||||| || ||| ||| ||||||| || || || | || Sbjct 1524 GTGGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTT 1583 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || | || || || || || |||| ||| |||||||| |||||||| Sbjct 1584 CAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | |||| ||| |||||| |||||| || || ||||| ||||| Sbjct 952 ACCACCACGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1011 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | || | || || | |||||||||||| || || || ||||| || || | ||| Sbjct 1012 GAGAGTGCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGG 1071 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| || || |||||| |||| || ||||| | || || Sbjct 1072 AATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGAC 1131 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | ||| || ||||| |||||||| Sbjct 1132 CTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 >seq2162 Length=1831 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 927 CTCTCTTTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTTCTATCGGTCTCGC 868 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 867 GGTCGTATTTAGCCTTA 851 >seq9050 Length=5602 Score = 107 bits (118), Expect = 1e-18 Identities = 73/82 (89%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5089 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 5030 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 |||||| ||||| ||||||||| Sbjct 5029 TAATCCATTCATACGCGTCACT 5008 >seq8175 Length=5382 Score = 107 bits (118), Expect = 1e-18 Identities = 73/82 (89%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5255 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 5196 Query 25957 TAATCCTTTCATGCGCGTCACT 25978 |||||| ||||| ||||||||| Sbjct 5195 TAATCCATTCATACGCGTCACT 5174 >seq9051 Length=5967 Score = 105 bits (116), Expect = 4e-18 Identities = 72/81 (89%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5849 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 5790 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| ||||| |||||||| Sbjct 5789 TAATCCATTCATACGCGTCAC 5769 >seq9048 Length=5760 Score = 105 bits (116), Expect = 4e-18 Identities = 72/81 (89%), Gaps = 5/81 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 5638 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 5579 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| ||||| |||||||| Sbjct 5578 TAATCCATTCATACGCGTCAC 5558 >seq8832 Length=5809 Score = 105 bits (116), Expect = 4e-18 Identities = 72/81 (89%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 272 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 331 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| ||||| |||||||| Sbjct 332 TAATCCATTCATACGCGTCAC 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334904614812992