Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10254 131 1e-25 seq9793 113 4e-20 seq6048 91.5 1e-13 seq5271 82.4 6e-11 >seq10254 Length=5829 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||| || || ||||| ||||| || || |||| | || ||||| Sbjct 5046 AAGATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGA 5105 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || | ||| || || |||||||||||||| ||||| || || Sbjct 5106 AGCGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAC 5165 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||||| || || || || || || | |||||| |||||| | ||||| ||| Sbjct 5166 CAGCAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTAC 5225 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || |||||| | || || || Sbjct 5226 AACATCCAAAAGGAGTCCACCCTCCACTTGGT 5257 >seq9793 Length=2388 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||||||||| || ||| ||| | Sbjct 1635 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGC 1576 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || ||||||||||| || || ||||| || ||| Sbjct 1575 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 1516 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| ||||| | || ||| ||| || | ||||| |||||| Sbjct 1515 CAGAGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAAC 1456 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| || | ||||| || ||| | ||| | ||||| Sbjct 1455 ATCCAGAAGGAATCTACACTCCATTTGGTGTTGAGGTTGAGAGGAGG 1409 >seq6048 Length=7890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || ||||| | || |||||||| | || | || || || | Sbjct 1767 AAAATGCAAATTTTCGTGAAAACCCTCACGGGTAAAACTATTACCTTGGAGGTAGAGCCA 1826 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||||| | ||| || |||| | || || ||||||||||| || ||||| || ||| Sbjct 1827 AGCGATACCATTGACAATGTCAAGAACAAGATCCAAGACAAGGAAGGAATTCCTCCAGAT 1886 Query 22336 CAACAACGTCTTATATTTGCCGG 22358 || |||||||| || || || || Sbjct 1887 CAGCAACGTCTGATCTTCGCAGG 1909 >seq5271 Length=37008 Score = 82.4 bits (90), Expect = 6e-11 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 129985 GGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACC 130044 || ||||||| | ||||||| ||| ||| ||||| |||||| ||||||||||| ||| Sbjct 22379 GGGCACATCAGAGACCACATTTTATCTTCTTTGACTCTTTTCATGAACAAATCGGGGACC 22438 Query 130045 CACAGGGCGTACAACAAATCTCGCGCTT----TTCTATCCTCGGCACCCATGTTACGTTT 130100 || || || || |||||||||| | || | || |||||| || ||||| ||| Sbjct 22439 CAAAGAGCATAAAACAAATCTC-TGATTCTCATGCTTTCCTCG---CCAGTGTTAACTTT 22494 Query 130101 CAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCAT 130154 | || | || ||| | | |||| |||||| || || | |||||| || || Sbjct 22495 TAATTGGACAAAGTCGAACACATCGGGGTGCCAGGGCTCCAAATAAATCGCAAT 22548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419674635782080