Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9793 134 3e-26 seq10254 125 2e-23 seq10256 93.3 1e-13 >seq9793 Length=2388 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || || || ||||| | ||||||||| ||||| Sbjct 1444 TTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAA 1503 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | |||||| |||||||||||| || || ||||| || || || || || Sbjct 1504 GATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTTGCCTTGACATT 1563 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | ||| || || || ||||| ||||| || ||||| ||||| || Sbjct 1564 CTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCAC 1623 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 1624 GAAGATCTGCAT 1635 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | ||| ||||| || ||||| || |||||||| |||||| Sbjct 1217 TCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTGTTTTCCGGCGAAG 1276 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || ||| |||||| ||||||||||| ||||| || || || |||||| Sbjct 1277 ATCAATCTTTGCTGA---TCTGGGGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTCACG 1333 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | ||| ||||| | ||||| ||||| || |||| || || Sbjct 1334 TTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGTCAACGTTTTC 1393 Query 288460 ACGAATATCTGCATT 288474 ||||| || |||||| Sbjct 1394 ACGAAGATTTGCATT 1408 Score = 118 bits (130), Expect = 3e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| ||||| || | || || | ||| ||||| ||||||||||| || || Sbjct 1962 TTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAA 2021 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || || ||| ||||| ||||| || |||||||| || || || || Sbjct 2022 GATGAGACGTTGCTG---GTCTGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGAC 2078 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| || || || || || ||||| ||||| ||||||| ||||| Sbjct 2079 ATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTT 2138 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 2139 CACAAAGATCTGCAT 2153 >seq10254 Length=5829 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || ||||| || || || | ||| ||||| |||||| Sbjct 5239 TCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGTTGCTTTCCAGCGAAG 5180 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||||||| || || |||||| || || || || || ||||| || |||||||| Sbjct 5179 ATCAGACGTTGCTGG---TCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCTTTCACA 5123 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||||| || || || | ||||| ||||| ||||||| ||||||| Sbjct 5122 TTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTG 5063 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 5062 ACGAAAATTTGCAT 5049 >seq10256 Length=21994 Score = 93.3 bits (102), Expect = 1e-13 Identities = 202/296 (68%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 72504 GTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTAT 72563 || || ||| | ||| | || |||||| |||||||| ||| | || | |||| Sbjct 2604 GTCGCCAAGCTCTACTCCTACTGGATCGTCGTCAATTACCGCGAGGCCTACGAGATGTTC 2663 Query 72564 GTATGCAACTCGATTTGTTT-CAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGAC 72622 | |||| | || || ||| ||| || |||||||| | ||||| | ||| ||||| Sbjct 2664 GCC-GCAAATGGAATTCTTTTCAACCATGAGAGTCCAAGAAGAGGAGAGACGTTTGTGAC 2722 Query 72623 TCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAA-AATGCATGTATC 72681 || |||||||| | ||||| || || | | ||| | || |||| || | | Sbjct 2723 CCGAAAAATCACTCGAGGCGTCGCCAAGATCT-CTCTGGGGCAACAAGAATGTCTGGAAC 2781 Query 72682 TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGT 72741 | || ||| | || || ||||||||||| |||| ||||| ||||| || ||||||| Sbjct 2782 TGGGAAATCTGAATTCCTTGAGAGATTGGGGGCATGCCAAGGAATACGTGGAGGCAATGT 2841 Query 72742 GGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACA 72797 || || || ||||| || | || ||||||| ||| ||||| || |||||||| Sbjct 2842 GGAGAATTCTCCAACACGACAACCCCGATGACTTTGTAATTGCGAC-TGGAAAACA 2896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179496727392896