Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq10254 113 5e-20 seq9793 104 2e-17 >seq10254 Length=5829 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | |||||| | || || || ||||| || Sbjct 5245 GTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGTTGCTTTCCA 5186 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || || |||||||| || ||||| || || || ||||| || || ||||| Sbjct 5185 GCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG-GCTTT 5127 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | || || | | ||||| || | || | |||||||||||||||||| Sbjct 5126 CACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAAAGT 5067 Query 64426 TTTTACGAAAATTTGCATTTT 64446 || |||||||||||||| || Sbjct 5066 CTTGACGAAAATTTGCATCTT 5046 >seq9793 Length=2388 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || ||||| | ||| Sbjct 968 AGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 1027 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || || ||||| | ||||| || |||||||| || ||||||||||| || || Sbjct 1028 TCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCC 1087 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | |||||| || || || || | || | |||| Sbjct 1088 TGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTC 1147 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 1148 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | || ||||||| | ||||| | ||| || ||| Sbjct 1211 GTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTGTTTTCCG 1270 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | ||||| || || || ||||||||||| || || || || ||| Sbjct 1271 GCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTTGGCCTTC 1330 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || || || ||||| | || | ||||| || ||||| ||| Sbjct 1331 ACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGTCAACGTT 1390 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| ||||||||| Sbjct 1391 TTCACGAAGATTTGCATT 1408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || ||||| || || ||||| ||||| | | ||| | | ||| Sbjct 1942 AGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCT 2001 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || |||||| | ||||| || |||||||| || || || ||||| || || Sbjct 2002 TCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCC 2061 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || || || || || | ||| | |||| Sbjct 2062 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTC 2121 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || || || || ||||| Sbjct 2122 TTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499579646318080