Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10254 118 1e-21 seq9793 100 3e-16 >seq10254 Length=5829 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | || ||||| ||||| || ||||| ||| Sbjct 5276 TCCACCACGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 5217 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| ||| || || || ||||||||| |||||| || ||||| || || || Sbjct 5216 CAGGGTGCGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGG 5157 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || || | | |||| |||||| | | ||| || Sbjct 5156 AATGCCCTCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCAC 5097 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||||| ||| || || ||||| ||||| Sbjct 5096 CTCCAAGGTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTGCAT 5049 >seq9793 Length=2388 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || ||||| ||||||| ||||||||||| || || ||||| ||||||||| ||| || Sbjct 1783 TTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 1842 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||||| | ||||| |||||| | ||||| || | ||| | || ||||| || Sbjct 1843 GCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGTG 1902 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 |||||||| || ||||||||||| Sbjct 1903 AGAGTTTTGACGAAAATCTGCAT 1925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126901 CAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATC 126960 |||||||||||| | ||||| || || || || ||||| ||| | || || ||| Sbjct 1423 CAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATC 1482 Query 126961 GTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 127020 || || |||||||| ||| ||||||||| ||| || || || || || || |||||||| Sbjct 1483 TTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTC 1542 Query 127021 CGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT 127080 ||| || ||||| | |||| ||||| | || || || | || | || Sbjct 1543 TTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGT 1602 Query 127081 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || || || || |||||||| Sbjct 1603 CTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475438794695680