Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9793 118 1e-21 seq5271 102 7e-17 seq10254 93.3 4e-14 >seq9793 Length=2388 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || |||||||| ||||| |||||||| | |||| | ||| || Sbjct 1944 CACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTC 2003 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 |||||||||||| || | || | ||||||||||| || || || ||||| || || || Sbjct 2004 CAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTG 2063 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| ||| | ||||||||| | |||||| || ||||| | || || Sbjct 2064 GATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTT 2123 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | || || ||||| || ||||| Sbjct 2124 GCCGGTCAAGGTCTTCACAAAGATCTGCAT 2153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || || || ||| ||| ||||| ||| Sbjct 1205 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTGT 1264 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | ||||||| |||||| || || || || |||||||| || ||||| || Sbjct 1265 TTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTTG 1324 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||||| |||| |||||||| | || | || || || || Sbjct 1325 GCCTTCA-CGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGT 1383 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || |||||||| Sbjct 1384 CAACGTTTTCACGAAGATTTGCAT 1407 >seq5271 Length=37008 Score = 102 bits (112), Expect = 7e-17 Identities = 174/248 (70%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 123279 GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTAC 123338 || ||||| ||| || |||| ||||| ||| | || || |||||| ||||||| | Sbjct 22569 GGAGGCAAGCGCCCCAGCTCGATTGCGATTTATTTGGAGCCCTGGCACCCCGATGTGTTC 22510 Query 123339 GATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTG 123398 || ||| | | |||||| |||| || | |||| | || | | | |||||||| Sbjct 22509 GACTTTGTCCAATTAAAAGTTAACACTGGCGAGGAAAGCATGAGAATCAGAGATTTGTTT 22450 Query 123399 TACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCG 123458 || ||| | ||||| ||||||||||| ||| | | || ||||| || ||||||| Sbjct 22449 TATGCTCTTTGGGTCCCCGATTTGTTCATGAAAAGAGTCAAAGAAGATAAAATGTGGTCT 22390 Query 123459 CTCATGTGTCCCGATCGG--TGTCCCGG-CTTGAGCGACGTTTACGGCAATCAGTTTGAC 123515 || ||||| ||| | || ||||| || ||||| ||| || || ||||| | ||||| Sbjct 22389 CTGATGTGCCCC--TTGGACTGTCCTGGCCTTGA-CGAAGTCTATGGCAAGGAATTTGAG 22333 Query 123516 GAGTTGTA 123523 ||||||| Sbjct 22332 AAGTTGTA 22325 >seq10254 Length=5829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || || ||| | ||| | ||| |||| ||| Sbjct 5251 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGTTGC 5192 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| ||||||||||| || |||||||| || || ||||| || || Sbjct 5191 TTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 5132 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | || | ||||||| ||| || || | || | || |||||||| Sbjct 5131 GCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAGGTGATGGTCTTGCCGGTC 5072 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 | ||| || || |||||||||||| Sbjct 5071 AAAGTCTTGACGAAAATTTGCATC 5048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451944258782720