Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4549 96.9 4e-15 seq8142 93.3 5e-14 >seq4549 Length=14857 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||| || ||||||||||| ||||| | ||| || || || | ||||| | || Sbjct 13819 CCGACCGCATCAATTTCGTCGATGAACAAGATGCATGGGGAGTTCTTTCGGGCCATGGCA 13760 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || ||||| || ||||| || || ||||| |||||||| || | || | | || Sbjct 13759 AACATATCACGGACTCTTGCGGGGCCAACACCAACAAACATTTCGAGGAATTCTGATCCG 13700 Query 12996 GA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || ||| | |||||||||||| |||| ||| || ||| | ||| ||| || |||||||| Sbjct 13699 GAGACAGT-GATGAAGGGGACATTGGCTTCTCCGGCGGTTGCTTTGGCCAGAAGGGTCTT 13641 Query 13055 CCCCGTCCCTGG 13066 || || ||||| Sbjct 13640 ACCAGTACCTGG 13629 >seq8142 Length=52432 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 117019 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTG 117078 ||||||| | |||||| || || || || || ||||| |||||| | |||| || Sbjct 7180 TGGATGTTGAGACCAATTCCGCCGGCGCATTTCGAGATCATAGCGCACCTCTTGAGCGTG 7239 Query 117079 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 |||||| |||||||| || || | | | | ||||||||||| |||| || Sbjct 7240 GTGTAGATTCCATCGATGGAATCGTCGGCCATGGTCAGAAGGAAGCAGCTAGACAGCTGG 7299 Query 117139 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 117198 || |||| ||||| || ||||||||||| || || |||||| | ||| || | |||| Sbjct 7300 GGAATTGGAGTACCGGCATTGAAGAGGGTGGGAGTGGCGTGGGTAAACCAACGCTCGGAC 7359 Query 117199 ATCTTATCGTAGGTCT 117214 ||| | |||||||| Sbjct 7360 ATCAAGTTGTAGGTCT 7375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || ||||| | | ||| ||| | ||| || || || ||| Sbjct 6315 GCGATGGATGCCAAGTTGCACACCGCGACCTCGTCCGGCGAGGAGTATTCGATGATCTCC 6374 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || ||||| || || | ||| ||||||||||| || | ||||| |||||| ||| || Sbjct 6375 GTGCACAAGTTGGAGCACTTGATGGTGCCCAAATTTTGCTGATTCGACTTTCGGTTGCAA 6434 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||||||||| |||||| ||| || || || ||||||||||| || || | | Sbjct 6435 TGATCCTTGTAGACCATATAAGGCAATCCAGTTTCGCATTGGGACTTGATGATTGCTTGC 6494 Query 116611 CATACATC 116618 || | ||| Sbjct 6495 CAGAGATC 6502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613427198661120