Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9793 159 8e-34 seq10254 136 9e-27 seq6048 96.9 8e-15 >seq9793 Length=2388 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| |||||||| |||| ||||||||||| | ||| Sbjct 959 CGAAGACGGAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTG 1018 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || |||||||||||||||||||| |||||||| || ||||||| Sbjct 1019 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCT 1078 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||| || | | || || ||||| Sbjct 1079 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAG 1138 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 1139 GTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTG 1176 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | |||||| || ||||||||||||| ||||||||| | | || Sbjct 1187 CGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTG 1246 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||| |||||||||||||| | | ||||| || || |||||| Sbjct 1247 CGCCCATCTTCCAACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCT 1306 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| ||||||| |||| ||||| | | ||| || ||||| Sbjct 1307 TCTTTGTCCTGAATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAAT 1366 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | |||||||| || ||||| Sbjct 1367 GTGATTGTCTTTCCAGTCAACGTTTTCACGAAGATTTG 1404 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || ||||| |||| ||| || |||| | || ||||||||||||| || Sbjct 1951 TGGAGAGTGGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTCCAATTGT 2010 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||| ||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct 2011 TTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCCTGGATCTTG 2070 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| |||||| | | || || || | ||||| ||||| || || Sbjct 2071 GCCTTGACATTTTCGATGGTGTCGGACGCCTCGACCTCAAGAGTGATGGTCTTGCCGGTC 2130 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || |||||||| || || Sbjct 2131 AAGGTCTTCACAAAGATCTG 2150 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| |||| ||||||||| | | ||| | |||||||| || || Sbjct 1433 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCATCTTCGAGTTGT 1492 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | | ||| ||||| || |||||||| || || |||||| Sbjct 1493 TTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTT 1552 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || |||| ||||| | | ||| || || | ||||| ||||| || || Sbjct 1553 GCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATGGTCTTTCCAGTC 1612 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || Sbjct 1613 AGGGTCTTCACGAAGATCTG 1632 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || ||||| | ||||||||| || || ||| ||||| ||||| ||||| Sbjct 1782 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1841 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||||| |||||| | | ||| || ||||| ||||| ||||| || || Sbjct 1842 GGCCTTGACATTTTCGATGGTGTCGCTGGCTTCGACCTCCAAGGTGATGGTCTTGCCAGT 1901 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||||||||| || ||||| || Sbjct 1902 GAGAGTTTTGACGAAAATCTG 1922 >seq10254 Length=5829 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | |||||| || ||||||||||||| ||||||||| | || || Sbjct 5269 CGAAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTG 5210 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||| |||||||| |||||||| ||||| |||||||| || ||| || Sbjct 5209 CGACCATCCTCCAGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCC 5150 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||||| |||| |||||| || || || ||||| Sbjct 5149 TCCTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGCTTCCCTCCACCTCCAAG 5090 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || |||||||| Sbjct 5089 GTGATGGTCTTGCCGGTCAAAGTCTTGACGAAAATTTG 5052 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | || |||||||| || ||||||||| ||||| ||||| Sbjct 5420 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5361 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| |||| ||| || | | || || ||||| ||||| ||||| || || Sbjct 5360 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5301 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || |||||||| ||||| Sbjct 5300 GAGGGTCTTCACAAAGATTTG 5280 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| | || |||||||| || ||||||||| ||||| ||||| Sbjct 5730 CTTACCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTT 5671 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||||| |||| ||| || | | || || ||||| ||||| ||||| || || Sbjct 5670 GGCCTTCACGTTCTCGATGGTATCAGAAGCCTCAACCTCCAAGGTGATGGTCTTCCCGGT 5611 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 ||| || |||||||| ||||| Sbjct 5610 GAGGGTCTTCACAAAGATTTG 5590 >seq6048 Length=7890 Score = 96.9 bits (106), Expect = 8e-15 Identities = 111/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || |||||||| ||||| ||||| || ||| ||||||||| || || ||||| | | Sbjct 1909 CCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGTTC 1850 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || || | ||| || ||| ||||| ||||| || || || ||||||||||| Sbjct 1849 TTGACATTGTCAATGGTATCGCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCGTGAGG 1790 Query 199610 GTTTTCACAAAAATTTGGTACATTTTAGC 199638 |||||||| |||||||| |||||| || Sbjct 1789 GTTTTCACGAAAATTTG---CATTTTCGC 1764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178764025338944