Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10254 129 6e-25 seq9793 127 2e-24 seq8564 87.8 2e-12 >seq10254 Length=5829 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || | || ||||| ||||||||| | || || |||| Sbjct 5046 AAGATGCAAATTTTCGTCAAGACTTTGACCGGCAAGACCATCACCTTGGAGGTGGAGGGA 5105 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||||| | | | | | |||| || |||| ||||| ||||| |||||| | ||| Sbjct 5106 AGCGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGAC 5165 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | ||| || || || ||||| || | |||||||| ||||||| Sbjct 5166 CAGCAACGTCTGATCTTCGCTGGAAAGCAACTGGAGGATGGTCGCACCCTGTCCGACTAC 5225 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || || ||||| || ||| Sbjct 5226 AACATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGT 5264 >seq9793 Length=2388 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||||| | Sbjct 1179 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTCGAGGCTTCT 1120 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || ||||||||| | ||||| Sbjct 1119 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 1061 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || ||||| || || || | ||||| ||| |||||||| Sbjct 1060 GCAACGTCTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGCACTCTCTCTGACTACAA 1001 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| |||| || ||| Sbjct 1000 CATCCAGAAGGAGTCCACTCTCCATCTGGTCCTCCGT 964 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || |||||||| | || || || |||| | Sbjct 1635 ATGCAGATCTTCGTGAAGACCCTGACTGGAAAGACCATCACTCTTGAGGTTGAAGCCAGC 1576 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||| |||| ||||| || ||||| || | |||||| Sbjct 1575 GACACGATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAA 1516 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| || ||||| || || || | || || || |||||||||| Sbjct 1515 CAGAGATTGATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTTCCGACTACAAC 1456 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||||||| || | |||||||| || Sbjct 1455 ATCCAGAAGGAATCTACACTCCATTTGGTGTTGAGGTTGAGAGGAGG 1409 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || |||||||| || Sbjct 2153 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACTCTTGAGGTCGAGGCGTCC 2094 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || || ||| | ||||| Sbjct 2093 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAG 2034 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| |||| || | | ||||| || || ||| Sbjct 2033 CAACGTCTCATCTTTGCCGGAAAACAATTGGAAGATGGAAGAACCCTTTCTGATTATAAC 1974 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||||||||||| || |||||||| || Sbjct 1973 ATCCAGAAGGAATCCACTCTCCATTTGGTGCTCCGGTTGAGAGGTGG 1927 Score = 111 bits (122), Expect = 2e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| |||||| | || || || || ||||| | || ||||| || | Sbjct 1408 AATGCAAATCTTCGTGAAAACGTTGACTGGAAAGACAATCACATTGGAAGTCGAAGCTTC 1349 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || || | |||||||| ||||| ||| | || | Sbjct 1348 GGACACGATCGAGAACG-TGAAGGCCAAGATTCAGGACAAAGAAGGAATCCCCCCAGATC 1290 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | | || | ||| || |||||| |||| || | |||||||||| ||||||| Sbjct 1289 AGCAAAGATTGATCTTCGCCGGAAAACAGTTGGAAGATGGGCGCACCCTCTCGGACTACA 1230 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || ||||| || ||| Sbjct 1229 ACATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGT 1192 >seq8564 Length=72546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || || || || || | || ||||| |||||||| | ||||||||| ||||| || Sbjct 47424 TATGTATCAATCAGAATAGAGTACATCTCCGAGTGAATGTTCTCCATCATAATTTGGAAT 47483 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || || |||| ||||| | | |||||| | ||||||||||| |||||| Sbjct 47484 CCATAGAAACACCTAGCCTCAGGAAGTTTCACTTCGGCATTGAAACGCTCGATCAGATTC 47543 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||||| ||||| || || || || ||||||||||| ||| | |||||| Sbjct 47544 TCGTTAACGATTCCATCCGAAGCCGCAAAAAAGGCCAGAACGCGAGAGATGAA 47596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500107577466880