Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4549 109 6e-19 seq8142 84.2 3e-11 >seq4549 Length=14857 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 |||| || |||||||| || || ||||| | || ||||| || | ||||| || Sbjct 13821 TTCCGACCGCATCAATTTCGTCGATGAACAAGATGCATGGGGAGTTCTTTCGGGCCATGG 13762 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 9483 |||| | ||| || || ||| || ||| |||||||||||||| || | || | || Sbjct 13761 CAAACATATCACGGACTCTTGCGGGGCCAACACCAACAAACATTTCGAGGAATTCTGATC 13702 Query 9484 CGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 9542 |||| ||| || |||||||||||||| | ||| || || | ||| ||| ||||| ||| Sbjct 13701 CGGAGACAGTG-ATGAAGGGGACATTGGCTTCTCCGGCGGTTGCTTTGGCCAGAAGGGTC 13643 Query 9543 TTACCCGTACCTGG 9556 ||||| |||||||| Sbjct 13642 TTACCAGTACCTGG 13629 >seq8142 Length=52432 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 107047 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTA 107104 || |||||||| | ||||| || || || || || ||||| | |||||| ||| | Sbjct 7176 ATTATGGATGTTGAGACCAATTCCGCCGGCGCATTTCGAGATCATAGCGCAC-CTCT-TG 7233 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || ||||| || | ||| || || || ||| | ||||||||| || ||| Sbjct 7234 AGCGTGGTGTAGATTCCATCGATGGAATCGTCGGCCATGGTCAGAAGGAAGCAGCTAGAC 7293 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 | ||| || |||| ||||| |||||||||||||| || || ||||| | ||| || Sbjct 7294 AGCTGGGGAATTGGAGTACCGGCATTGAAGAGGGTGGGAGTGGCGTGGGTAAACCAACGC 7353 Query 107225 TGGGACATCTTGTCGTATGTCT 107246 | ||||||| || ||| |||| Sbjct 7354 TCGGACATCAAGTTGTAGGTCT 7375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589903866503680