Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9793 158 3e-33 seq6048 104 5e-17 >seq9793 Length=2388 Score = 158 bits (174), Expect = 3e-33 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| ||||| || ||||| || | || || | ||||||||| | ||| Sbjct 1204 GTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCCAACTG 1263 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || ||| || ||||| || || ||||||||||| ||||| || Sbjct 1264 TTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTT 1323 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| || ||||||||| ||| ||||| | || | |||||||| || Sbjct 1324 GGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTTCCAGT 1383 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| ||||| | ||||||| Sbjct 1384 CAACGTTTTCACGAAGATTTGCATT 1408 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || | || || || || || || || || ||||| |||| |||||| | ||| Sbjct 1421 CTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGGCCA 1480 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 |||||||| || || || |||||||| | || ||||||||||| || || ||||| ||| Sbjct 1481 TCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTGGGATTCCTTCCTTG 1540 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||| || ||| |||||| ||||| || ||||| ||| || ||||| || | Sbjct 1541 TCTTGGATCTTTGCCTTGACATTCTCGATCGTGTCGCTGGCTTCAACCTCAAGAGTGATG 1600 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| |||| || || ||||| | ||||| Sbjct 1601 GTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCAT 1635 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| || || || ||||| || | ||||| | |||||||| Sbjct 971 ACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 1030 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| || ||||| |||||||| ||||| ||||| ||||| || Sbjct 1031 AGTTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1090 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| ||||| || ||| || || || | ||| | ||||| Sbjct 1091 ATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTG 1150 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1151 CCAGTGAGGGTCTTAACGAAGATCTGCAT 1179 >seq6048 Length=7890 Score = 104 bits (114), Expect = 5e-17 Identities = 112/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| || ||||| || ||||||||||| ||||| |||||||| || || | Sbjct 1911 TACCTGCGAAGATCAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATCTTGT 1852 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCTG 195115 |||||| || |||||||| || ||| || || || | ||||| || || || | Sbjct 1851 TCTTGACATTGTCAATGGTATC---GCTTGGCTCTACCTCCAAGGTAATAGTTTTACCCG 1795 Query 195116 TCAAAGTTTTTACGAACACTTGCATTT 195142 | | ||||| ||||| | |||||||| Sbjct 1794 TGAGGGTTTTCACGAAAATTTGCATTT 1768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109333306689344