Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9793 138 7e-28 seq10254 98.7 6e-16 >seq9793 Length=2388 Score = 138 bits (152), Expect = 7e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| ||||||||||| ||||| || | ||| ||| ||||| ||||| ||||| | Sbjct 1407 TTCCTCCTCTCAACCTCAACACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCGG 1466 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || || ||||||||||| || || | || || |||||| | | Sbjct 1467 AAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGTG 1526 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930 | | || |||||||| ||||| ||||| || || |||| || | ||| || Sbjct 1527 GGATTCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATCGTGTCGCTGGCTTC 1584 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || ||||| ||||| || || |||||||| |||||||||||| Sbjct 1585 AACCTCAAGAGTGATGGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATA 1636 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || ||||||| | ||||| || | ||| ||| ||||| |||||||| || | Sbjct 1925 TTCCACCTCTCAACCGGAGCACCAAATGGAGAGTGGATTCCTTCTGGATGTTATAATCAG 1984 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| ||| | |||| |||| |||||||||||||| || || |||||||||||| | | Sbjct 1985 AAAGGGTTCTTCCATCTTCCAATTGTTTTCCGGCAAAGATGAGACGTTGCTGGTCTGGGG 2044 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| ||||| | | || | || ||||| | Sbjct 2045 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGACGCCTCGA 2104 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | || ||||| || || || | ||||||||||||||||||||| Sbjct 2105 CCTCAAGAGTGATGGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATA 2154 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || || ||||||||||| || Sbjct 989 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGTTGTTTTCCGGCGAAG 1048 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | || |||||||| ||||| || ||| Sbjct 1049 ATGAGACGTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1108 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| ||||| || || | ||| ||||| || || ||||| ||||| || Sbjct 1109 TCGATGGTATCAGAAGCCTCGACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 1168 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 1169 AAGATCTGCATA 1180 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || || ||||| |||||||| ||| | || |||| ||| Sbjct 1199 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAGAGGGTGCGCCCATCTTCC 1258 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||||||| || || | || |||||| ||| | || | || || ||||| | Sbjct 1259 AACTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGA 1318 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | |||| || || || || || | || || || ||| Sbjct 1319 ATCTTGGCCTTCACGTTCTCGATCGTGTCCGAAGCTTCGACTTCCAATGTGATTGTCTTT 1378 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||| ||||| ||||| Sbjct 1379 CCAGTCAACGTTTTCACGAAGATTTGCAT 1407 >seq10254 Length=5829 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/219 (70%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || || ||||| ||||| || ||| | || |||| ||| Sbjct 5257 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCC 5198 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||| || || || || |||||||||||| | || | ||||||||||| Sbjct 5197 AGTTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 5138 Query 34893 ATCTTCTGTTTGAC-----GGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| || |||| | ||| ||| |||| || || | ||| |||| Sbjct 5137 ATCTTGGCTTTCACATTCTCGATGGTGTCGCTTC-----CCTCCACCTCCAAGGTGATGG 5083 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 | || || || | |||||| || || || ||||| |||| Sbjct 5082 TCTTGCCGGTCAAAGTCTTGACGAAAATTTGCATCTTCG 5044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324592326084096