Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bursaphelenchus_20xylophilus_20[genbank_20GCA_5F000231135.1_202011- 10-13] 10,432 sequences; 73,085,728 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5271 89.7 6e-13 >seq5271 Length=37008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||| |||||||||||||| | ||||| || | || | |||||||| || || Sbjct 22322 GTATACAACTTCTCAAATTCCTTGCCATAGACTTCGTCAAGGCCAGGACAGTCCAAGGGG 22381 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 ||||||| ||||| | ||| | ||| ||||| |||| || | ||| || | |||| Sbjct 22382 CACATCAGAGACCACATTTTATCTTCTTTGACTCTTTTCATGAACAAATCGGGGACCCAA 22441 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATT-CCTTTTAAGTTC 48292 ||||| ||| ||||| || |||| | ||| | |||| | || ||||||| || Sbjct 22442 AGAGCATAAAACAAATCTCTGATTCTCATGCTTTCCTCGCCAGTGTTAACTTTTAA-TTG 22500 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCAT 48340 | |||||| | | ||| | ||||| || || ||||| || || || Sbjct 22501 GACAAAGTCGAACACATCGGGGTGCCAGGGCTCCAAATAAATCGCAAT 22548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562035501012480